clustering_resume

clustering_resume summarizes clustering outputs by generating a summary tab from CD-HIT and CROP results to support interpretation of datasets produced by next-generation DNA sequencing.


Key Features:

  • Data Summarization: Compiles and summarizes clustering outputs into a concise summary tab for downstream interpretation and analysis.
  • Integration with CD-HIT and CROP: Processes clustering results produced by CD-HIT and CROP.
  • High-throughput sequencing compatibility: Targets large-scale datasets produced by high-throughput technologies such as next-generation DNA sequencing.
  • Galaxy framework tracking: Operates within the Galaxy framework where computational steps are tracked automatically.

Scientific Applications:

  • Biomedical research: Facilitates interpretation of large-scale clustering analyses from genomic and clinical sequencing datasets.
  • Genomics workflows: Provides summarized clustering outputs for downstream analyses in genomics and related fields.

Methodology:

Generates a summary tab from clustering outputs produced by CD-HIT and CROP and runs within the Galaxy framework where computational steps are tracked automatically.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Sequence clustering

Publications

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Links