CNV-ClinViewer

CNV-ClinViewer enables clinical evaluation and interactive exploration of copy-number variants (CNVs) to support pathogenicity interpretation, genotype–phenotype analysis, and identification of potential therapeutic targets.


Key Features:

  • Interactive visualization: Provides real-time interactive visualization of large CNV datasets for exploration and analysis.
  • Genomic exploration: Enables comprehensive genomic exploration of CNVs and their genomic contexts.
  • Standardized clinical interpretation: Integrates the ClassifCNV tool to provide semi-automated clinical interpretation of CNVs according to ACMG guidelines.
  • Hypothesis generation and decision support: Combines automated analyses with clinical judgment to support hypothesis generation and decision-making.

Scientific Applications:

  • Pathogenicity classification: Assists in classifying the pathogenicity of CNVs across clinical and research cohorts.
  • Genotype–phenotype analyses: Supports detailed analyses linking CNVs to phenotypic manifestations.
  • Therapeutic target identification: Facilitates identification of potential therapeutic targets through comprehensive CNV interpretation.

Methodology:

Integrates multiple data sources and leverages the ClassifCNV tool to provide semi-automated CNV interpretations aligned with ACMG guidelines.

Topics

Details

Cost:
Free of charge
Tool Type:
desktop application, web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R, Python
Added:
9/15/2023
Last Updated:
11/24/2024

Operations

Data Inputs & Outputs

Gene-set enrichment analysis

Publications

Macnee M, Pérez-Palma E, Brünger T, Klöckner C, Platzer K, Stefanski A, Montanucci L, Bayat A, Radtke M, Collins RL, Talkowski M, Blankenberg D, Møller RS, Lemke JR, Nothnagel M, May P, Lal D. CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online. Bioinformatics. 2023;39(5). doi:10.1093/bioinformatics/btad290. PMID:37104749. PMCID:PMC10174702.

PMID: 37104749
Funding: - German Federal Ministry for Education and Research: 01GM1907D

Links