CNV-ClinViewer
CNV-ClinViewer enables clinical evaluation and interactive exploration of copy-number variants (CNVs) to support pathogenicity interpretation, genotype–phenotype analysis, and identification of potential therapeutic targets.
Key Features:
- Interactive visualization: Provides real-time interactive visualization of large CNV datasets for exploration and analysis.
- Genomic exploration: Enables comprehensive genomic exploration of CNVs and their genomic contexts.
- Standardized clinical interpretation: Integrates the ClassifCNV tool to provide semi-automated clinical interpretation of CNVs according to ACMG guidelines.
- Hypothesis generation and decision support: Combines automated analyses with clinical judgment to support hypothesis generation and decision-making.
Scientific Applications:
- Pathogenicity classification: Assists in classifying the pathogenicity of CNVs across clinical and research cohorts.
- Genotype–phenotype analyses: Supports detailed analyses linking CNVs to phenotypic manifestations.
- Therapeutic target identification: Facilitates identification of potential therapeutic targets through comprehensive CNV interpretation.
Methodology:
Integrates multiple data sources and leverages the ClassifCNV tool to provide semi-automated CNV interpretations aligned with ACMG guidelines.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- desktop application, web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R, Python
- Added:
- 9/15/2023
- Last Updated:
- 11/24/2024
Operations
Data Inputs & Outputs
Gene-set enrichment analysis
Publications
Macnee M, Pérez-Palma E, Brünger T, Klöckner C, Platzer K, Stefanski A, Montanucci L, Bayat A, Radtke M, Collins RL, Talkowski M, Blankenberg D, Møller RS, Lemke JR, Nothnagel M, May P, Lal D. CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online. Bioinformatics. 2023;39(5). doi:10.1093/bioinformatics/btad290. PMID:37104749. PMCID:PMC10174702.