CoCiteStats

CoCiteStats analyzes co-citation data to characterize citation network structure and support interpretation of citation patterns in genomics and molecular biology.


Key Features:

  • Bioconductor interoperability: Integrates with the Bioconductor ecosystem, interoperating with its collection of 934 packages.
  • R integration: Implements analyses using the R statistical programming environment.
  • Open-source development: Distributed and developed as an open-source project with community contributions.
  • Formal review and testing: Subject to initial formal review and continuous automated testing within the Bioconductor framework.
  • Co-citation analysis capabilities: Provides analytical functions for processing co-citation data, identifying clusters of frequently cited papers, and assessing publication impact within networks.

Scientific Applications:

  • Examination of citation patterns: Enables analysis of citation patterns within the scientific literature.
  • Relationship discovery: Supports uncovering relationships between research works through co-citation networks.
  • Influential paper identification: Facilitates identification of influential or highly cited publications.
  • Tracking idea evolution: Allows tracking the evolution of scientific ideas over time.
  • Trend analysis in genomics and molecular biology: Assists in understanding trends specific to genomics and molecular biology fields.
  • Support for meta-analysis: Provides data and metrics useful for meta-analyses and informing future research directions.

Methodology:

Uses R to process co-citation data and generate insights into the structure and dynamics of citation networks, including identification of clusters of frequently cited papers and assessment of publication impact.

Topics

Collections

Details

License:
CPL-1.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.

Documentation

Downloads