codelink
codelink processes GE Healthcare Gene Expression Bioarrays to read, preprocess, and enable statistical analysis of microarray-based expression profiles.
Key Features:
- R integration: Leverages R's statistical functions and graphical capabilities for microarray data analysis.
- GE Healthcare Gene Expression Bioarrays support: Reads and processes data generated by GE Healthcare Gene Expression Bioarrays.
- Bioconductor-based analytics: Utilizes Bioconductor packages for data preprocessing, manipulation, and statistical analysis.
- Visualization: Produces graphical representations to visualize gene expression patterns and data trends.
Scientific Applications:
- Microarray expression profiling: Streamlines analysis of microarray expression profiles for gene-level investigations.
- High-throughput genomic analyses: Supports large-scale genomic studies using microarray data.
- Preprocessing and quality control: Enables preprocessing of large datasets to ensure data quality and integrity.
- Statistical evaluation: Facilitates complex statistical analyses to derive biological insights from expression data.
Methodology:
Integration of R with Bioconductor packages to efficiently read and preprocess microarray data from GE Healthcare platforms, apply statistical techniques to analyze gene expression patterns, and generate graphical representations.
Topics
Collections
Details
- License:
- GPL-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 12/16/2018
Operations
Data Inputs & Outputs
Nucleic acid sequence analysis
Publications
Diez D, Alvarez R, Dopazo A. Codelink: an R package for analysis of GE healthcare gene expression bioarrays. Bioinformatics. 2007;23(9):1168-1169. doi:10.1093/bioinformatics/btm072. PMID:17344240.
PMID: 17344240