codelink

codelink processes GE Healthcare Gene Expression Bioarrays to read, preprocess, and enable statistical analysis of microarray-based expression profiles.


Key Features:

  • R integration: Leverages R's statistical functions and graphical capabilities for microarray data analysis.
  • GE Healthcare Gene Expression Bioarrays support: Reads and processes data generated by GE Healthcare Gene Expression Bioarrays.
  • Bioconductor-based analytics: Utilizes Bioconductor packages for data preprocessing, manipulation, and statistical analysis.
  • Visualization: Produces graphical representations to visualize gene expression patterns and data trends.

Scientific Applications:

  • Microarray expression profiling: Streamlines analysis of microarray expression profiles for gene-level investigations.
  • High-throughput genomic analyses: Supports large-scale genomic studies using microarray data.
  • Preprocessing and quality control: Enables preprocessing of large datasets to ensure data quality and integrity.
  • Statistical evaluation: Facilitates complex statistical analyses to derive biological insights from expression data.

Methodology:

Integration of R with Bioconductor packages to efficiently read and preprocess microarray data from GE Healthcare platforms, apply statistical techniques to analyze gene expression patterns, and generate graphical representations.

Topics

Collections

Details

License:
GPL-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
12/16/2018

Operations

Data Inputs & Outputs

Publications

Diez D, Alvarez R, Dopazo A. Codelink: an R package for analysis of GE healthcare gene expression bioarrays. Bioinformatics. 2007;23(9):1168-1169. doi:10.1093/bioinformatics/btm072. PMID:17344240.

Documentation

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