CometAnalyser
CometAnalyser analyzes wide-field microscopy images of the Comet Assay obtained with fluorescent and silver-staining techniques to segment comets and quantify DNA damage at the single-cell level.
Key Features:
- Deep-learning segmentation and classification: Uses deep-learning algorithms to automatically segment and classify comets in wide-field fluorescent and silver-stained microscopy images.
- Feature extraction: Extracts intensity and morphological features, including Tail Moment, and exports these measurements to spreadsheet files.
Scientific Applications:
- Genotoxicity assessment: Quantifies DNA damage for genotoxicity studies, including damage induced by radiotherapy and chemotherapeutic agents.
- Single-cell DNA damage analysis: Measures displacement between comet head and tail and other single-cell parameters to assess DNA fragmentation.
Methodology:
Applies deep-learning algorithms for automated segmentation and classification of comets, extracts intensity and morphological features (including Tail Moment), and exports measurements to spreadsheet files.
Topics
Details
- License:
- BSD-3-Clause
- Cost:
- Free of charge
- Tool Type:
- plugin
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- MATLAB
- Added:
- 2/28/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Beleon A, Pignatta S, Arienti C, Carbonaro A, Horvath P, Martinelli G, Castellani G, Tesei A, Piccinini F. CometAnalyser: A user-friendly, open-source deep-learning microscopy tool for quantitative comet assay analysis. Computational and Structural Biotechnology Journal. 2022;20:4122-4130. doi:10.1016/j.csbj.2022.07.053. PMID:36016714. PMCID:PMC9385450.