CompareM2

CompareM2 generates portable dynamic reports from bacterial and archaeal genomes through integrated comparative analyses of isolates and metagenomic assemblies.

Key Features:

• Genome Quality Control: CompareM2 integrates community-adopted tools to assess genome quality.
• Genome Annotation: CompareM2 performs functional annotation of bacterial and archaeal genomes.
• Taxonomic Prediction: CompareM2 predicts taxonomic classifications for input genomes.
• Functional Prediction: CompareM2 predicts functional capabilities of microbial genomes.
• Core- and Pan-Genome Analysis: CompareM2 conducts comparative analyses of core- and pan-genome partitions.
• Phylogenetic Analysis: CompareM2 infers phylogenetic relations among compared genomes.
• Dynamic Report Generation: CompareM2 produces a portable dynamic report document emphasizing central workflow results.

Scientific Applications:

• Comparative Genomics: CompareM2 enables comparative analysis of bacterial and archaeal genomes from isolates and metagenomic assemblies.
• Microbial Genome Characterization: CompareM2 supports integrated quality control, annotation, and evolutionary analysis of microbial genomes.

Methodology:

CompareM2 integrates community-adopted tools into a genomes-to-report pipeline.