CONCOCT

A program for unsupervised binning of metagenomic contigs by using nucleotide composition, coverage data in multiple samples and linkage data from paired end reads.

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Topics

Metagenomics

Details

Added:: 11/2/2023
Last Updated:: 11/6/2024

Operations

Read binning
Sequence clustering

Publications

Alneberg J, Bjarnason BS, de Bruijn I, Schirmer M, Quick J, Ijaz UZ, Lahti L, Loman NJ, Andersson AF, Quince C. Binning metagenomic contigs by coverage and composition. Nature Methods. 2014;11(11):1144-1146. doi:10.1038/nmeth.3103.

DOI: 10.1038/nmeth.3103

Documentation

General

https://concoct.readthedocs.io/en/latest/

FAQ

https://app.gitter.im/#/room/#BinPro_CONCOCT:gitter.im

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