ConSIG
ConSIG identifies consistent molecular signatures from transcriptomic and proteomic OMIC datasets to improve robustness and biological relevance of gene and protein signatures.
Key Features:
- Consistency Enhancement: Applies consistency-enhancing algorithms to improve reproducibility of discovered gene and protein signatures.
- Optimal Signature Determination: Uses collective assessment approaches to aggregate multiple evaluations and determine an optimal molecular signature.
- Biological Relevance Confirmation: Enriches discovered signatures with disease/gene ontology annotations to confirm relevance to physiological conditions and disease etiologies.
Scientific Applications:
- Biological state characterization: Determining molecular signatures that distinguish biological states and physiological conditions.
- Disease etiology investigation: Identifying signatures relevant to disease etiology.
- Therapeutic response assessment: Deriving signatures associated with therapeutic responses.
Methodology:
Processes transcriptomic and proteomic data using consistency-enhancing algorithms and collective assessments to identify optimal signatures, followed by enrichment with disease/gene ontology annotations.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Added:
- 9/9/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Li F, Yin J, Lu M, Yang Q, Zeng Z, Zhang B, Li Z, Qiu Y, Dai H, Chen Y, Zhu F. ConSIG: consistent discovery of molecular signature from OMIC data. Briefings in Bioinformatics. 2022;23(4). doi:10.1093/bib/bbac253. PMID:35758241.
DOI: 10.1093/bib/bbac253
PMID: 35758241
Funding: - Natural Science Foundation of Zhejiang Province: LR21H300001
- National Natural Science Foundation of China: 81,872,798, U1909208
- Fundamental Research Fund for Central Universities: 2018QNA7023
- Key Research and Development Program of Zhejiang Province: 2020C03010
Documentation
Training material
http://idrblab.cn/consig/