CONSORT-NLP
CONSORT-NLP automates extraction and generation of CONSORT reporting checklists from PDF randomized clinical trial articles to standardize and evaluate adherence to CONSORT guidelines.
Key Features:
- Natural Language Processing (NLP): Leverages NLP to identify and generate CONSORT checklist items from trial text.
- CONSORT item coverage: Covers 34 of 37 CONSORT reporting items, with 30 items fully implemented.
- Accuracy: Achieves greater than 90% accuracy for the fully implemented items on validation sets.
- Efficiency: Generates checklists in an average of 23 seconds per article versus 11.9–57.6 minutes for manual review by three reviewers.
- Input format: Processes articles provided in Portable Document Format (PDF).
Scientific Applications:
- Trial reporting assessment: Automates evaluation of randomized clinical trial reports for adherence to CONSORT guidelines.
- Manuscript review support: Supports manuscript reviewers and journal editors by providing rapid CONSORT checklist generation during peer review.
- Author and researcher support: Assists clinicians, researchers, and scientists in preparing manuscripts to improve CONSORT compliance and reporting quality.
Methodology:
Development and evaluation used 158 published journal articles from high-impact journals in general/internal medicine, oncology, and cardiac/cardiovascular systems, split into training (111), testing (25), and validation (22) sets; the tool processes PDF articles and was evaluated on validation sets.
Topics
Details
- Tool Type:
- desktop application
- Programming Languages:
- Java
- Added:
- 1/18/2021
- Last Updated:
- 2/17/2021
Operations
Publications
Wang F, Schilsky RL, Page D, Califf RM, Cheung K, Wang X, Pang H. Development and Validation of a Natural Language Processing Tool to Generate the CONSORT Reporting Checklist for Randomized Clinical Trials. JAMA Network Open. 2020;3(10):e2014661. doi:10.1001/jamanetworkopen.2020.14661. PMID:33030549. PMCID:PMC7545295.