CoreProfiler
CoreProfiler is a cgMLST (core genome multilocus sequence typing) software that identifies alleles in bacterial genome assemblies by comparing them to a reference allele scheme. It detects both exact matches to known alleles and potential novel alleles using a two-step BLAST-based approach, enabling robust and reproducible strain genotyping.
Topics
Details
- Added:
- 4/8/2025
- Last Updated:
- 6/25/2025
Operations
Publications
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. Journal of Molecular Biology. 1990;215(3):403-410. doi:10.1016/s0022-2836(05)80360-2.
LAO J, MARIN P, DALLET R, MAREUIL F, TOISY ADE, Kenzo-Hugo HILLION, et al. ABRomics: an integrated multi-omics platform for antibiotic resistance research and public health. 2023Aug25; Available from: https://zenodo.org/record/8282656