Corna

Corna performs natural abundance correction (NAC) on metabolite intensity outputs from mass spectrometry to enable accurate quantification in stable isotope-based metabolomics.


Key Features:

  • Natural Abundance Correction (NAC): Applies NAC to metabolite intensity outputs derived from mass spectrometry experiments, including stable isotope tracer studies.
  • Multiple Tracer Support: Supports experiments with multiple tracer elements and includes correction capability for two tracer elements.
  • Algorithm Validation: Implements algorithms that have been validated against published tools where applicable.
  • Integration with Peak Integration Software: Integrates with an open-source peak integration software to process MS outputs and reduce overall processing time for stable isotope experiments.
  • Resolution and MS Mode Support: Accommodates different instrument resolutions and tandem MS setups.

Scientific Applications:

  • Metabolite quantification: Enables more accurate quantification of metabolites from mass spectrometry data in stable isotope experiments.
  • Metabolite identification: Improves correction of isotopic patterns to support metabolite identification from MS data.
  • Metabolic pathway discovery: Supports discovery of metabolic pathways by providing corrected isotopologue distributions for downstream analysis.
  • Intracellular flux measurement: Facilitates measurement of intracellular fluxes using stable isotope labeling and mass spectrometry.

Methodology:

Applies validated computational algorithms for natural abundance correction to MS-derived metabolite intensities, supporting multiple tracer elements (including two tracers), different instrument resolutions, tandem MS, and integration with open-source peak integration software.

Topics

Details

Tool Type:
library
Programming Languages:
Python
Added:
1/18/2021
Last Updated:
2/17/2021

Operations

Publications

Raaisa R, Lathwal S, Chubukov V, Kibbey RG, Jha AK. >Corna - An Open Source Python Tool For Natural Abundance Correction In Isotope Tracer Experiments. Unknown Journal. 2020. doi:10.1101/2020.09.19.304741.