CorRelator

CorRelator performs correlation of fluorescence light microscopy (FLM) and cryo-electron microscopy (cryo-EM) data to enable spatial localization of fluorescently labeled proteins, macromolecular complexes, and organelles for cryo-correlative light and electron microscopy (cryo-CLEM).


Key Features:

  • Flexibility in Workflow: Supports both on-the-fly and post-acquisition correlation schemes for integrating FLM and EM data.
  • Adaptability Across Platforms: Operates with any configuration of fluorescence and transmission electron microscope (TEM) systems.
  • Efficient Image Registration: Performs rapid image and position registration between FLM and TEM under cryogenic and ambient temperature conditions.
  • Spatiotemporal Guidance: Leverages spatiotemporal cues from FLM to guide high-resolution structural investigations with cryo-EM.
  • SerialEM Integration: Produces outputs compatible with SerialEM automated data collection to enable targeted investigations of transformed fluorescent targets of interest (TOIs) on registered EM images.

Scientific Applications:

  • Structural Biology: Correlates FLM and cryo-EM to locate and characterize proteins and macromolecular complexes for high-resolution structural studies.
  • Cell Biology: Enables mapping of organelles and the spatial organization and interactions of biomolecules within their cellular contexts using correlated FLM and EM data.
  • Microscopy-driven Targeting: Facilitates targeted, microscopy-driven investigations that require precise image alignment and position registration across modalities.

Methodology:

Integrates image registration, transformation, and correlation processes between EM and FM (FLM/TEM) data, produces outputs compatible with SerialEM automated data collection, and has been benchmarked across various FLM and TEM instruments.

Topics

Details

License:
MIT
Tool Type:
desktop application
Programming Languages:
Java
Added:
1/18/2021
Last Updated:
2/17/2021

Operations

Publications

Yang JE, Larson MR, Sibert BS, Shrum S, Wright ER. CorRelator: An interactive and flexible toolkit for high-precision cryo-correlative light and electron microscopy. Unknown Journal. 2020. doi:10.1101/2020.08.06.240481.