CorRelator
CorRelator performs correlation of fluorescence light microscopy (FLM) and cryo-electron microscopy (cryo-EM) data to enable spatial localization of fluorescently labeled proteins, macromolecular complexes, and organelles for cryo-correlative light and electron microscopy (cryo-CLEM).
Key Features:
- Flexibility in Workflow: Supports both on-the-fly and post-acquisition correlation schemes for integrating FLM and EM data.
- Adaptability Across Platforms: Operates with any configuration of fluorescence and transmission electron microscope (TEM) systems.
- Efficient Image Registration: Performs rapid image and position registration between FLM and TEM under cryogenic and ambient temperature conditions.
- Spatiotemporal Guidance: Leverages spatiotemporal cues from FLM to guide high-resolution structural investigations with cryo-EM.
- SerialEM Integration: Produces outputs compatible with SerialEM automated data collection to enable targeted investigations of transformed fluorescent targets of interest (TOIs) on registered EM images.
Scientific Applications:
- Structural Biology: Correlates FLM and cryo-EM to locate and characterize proteins and macromolecular complexes for high-resolution structural studies.
- Cell Biology: Enables mapping of organelles and the spatial organization and interactions of biomolecules within their cellular contexts using correlated FLM and EM data.
- Microscopy-driven Targeting: Facilitates targeted, microscopy-driven investigations that require precise image alignment and position registration across modalities.
Methodology:
Integrates image registration, transformation, and correlation processes between EM and FM (FLM/TEM) data, produces outputs compatible with SerialEM automated data collection, and has been benchmarked across various FLM and TEM instruments.
Topics
Details
- License:
- MIT
- Tool Type:
- desktop application
- Programming Languages:
- Java
- Added:
- 1/18/2021
- Last Updated:
- 2/17/2021
Operations
Publications
Yang JE, Larson MR, Sibert BS, Shrum S, Wright ER. CorRelator: An interactive and flexible toolkit for high-precision cryo-correlative light and electron microscopy. Unknown Journal. 2020. doi:10.1101/2020.08.06.240481.