COSORE
COSORE provides a community database and software platform for collecting, standardizing, and analyzing continuous soil-to-atmosphere CO2 (soil respiration, R_S) and CH4 flux data to support quantitative studies of soil carbon and greenhouse gas exchange.
Key Features:
- Data types: Stores high-frequency automated measurements of soil respiration (CO2, R_S), methane (CH4) fluxes, ecosystem respiration (Reco), and chamber-measured net ecosystem exchange (NEE).
- Standardized data model: Maps contributed datasets to a single, consistent standard to ensure uniform data structure and comparability across sites and studies.
- Metadata capture: Records contributor information, geographic location, measurement conditions, and ancillary data for each dataset.
- Experimental coverage: Accommodates datasets from observational and experimental treatments, including heterotrophic-only studies.
- Analysis software: Provides an accompanying R package to access and analyze the standardized datasets.
- Reproducibility and transparency: Emphasizes consistent metadata and standardized data formatting to support reproducible analyses and synthesis.
Scientific Applications:
- Earth sciences research: Enables quantitative analysis of soil-atmosphere greenhouse gas exchange across sites and time scales.
- Climate-change syntheses: Supports multi-site syntheses of soil CO2 and CH4 fluxes for regional to global assessments.
- Model evaluation: Provides standardized observational data for testing and benchmarking ecosystem and biogeochemical models of soil respiration and methane flux.
- Carbon-cycle studies: Facilitates investigations into soil carbon storage, flux dynamics, and implications for global carbon cycling.
Methodology:
Contributed measurements are mapped to a single consistent standard for uniform metadata and data quality, and an accompanying R package provides functions to access and analyze the standardized datasets.
Topics
Details
- License:
- CC-BY-4.0
- Tool Type:
- library
- Programming Languages:
- R
- Added:
- 1/18/2021
- Last Updated:
- 2/17/2021
Operations
Publications
Bond‐Lamberty B, Christianson DS, Malhotra A, Pennington SC, Sihi D, AghaKouchak A, Anjileli H, Altaf Arain M, Armesto JJ, Ashraf S, Ataka M, Baldocchi D, Andrew Black T, Buchmann N, Carbone MS, Chang S, Crill P, Curtis PS, Davidson EA, Desai AR, Drake JE, El‐Madany TS, Gavazzi M, Görres C, Gough CM, Goulden M, Gregg J, Gutiérrez del Arroyo O, He J, Hirano T, Hopple A, Hughes H, Järveoja J, Jassal R, Jian J, Kan H, Kaye J, Kominami Y, Liang N, Lipson D, Macdonald CA, Maseyk K, Mathes K, Mauritz M, Mayes MA, McNulty S, Miao G, Migliavacca M, Miller S, Miniat CF, Nietz JG, Nilsson MB, Noormets A, Norouzi H, O’Connell CS, Osborne B, Oyonarte C, Pang Z, Peichl M, Pendall E, Perez‐Quezada JF, Phillips CL, Phillips RP, Raich JW, Renchon AA, Ruehr NK, Sánchez‐Cañete EP, Saunders M, Savage KE, Schrumpf M, Scott RL, Seibt U, Silver WL, Sun W, Szutu D, Takagi K, Takagi M, Teramoto M, Tjoelker MG, Trumbore S, Ueyama M, Vargas R, Varner RK, Verfaillie J, Vogel C, Wang J, Winston G, Wood TE, Wu J, Wutzler T, Zeng J, Zha T, Zhang Q, Zou J. COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data. Global Change Biology. 2020;26(12):7268-7283. doi:10.1111/gcb.15353. PMID:33026137. PMCID:PMC7756728.
Downloads
- Software packagehttps://github.com/bpbond/cosore/releases