Covid-19.bioreproducibility.org

Covid-19.bioreproducibility.org aggregates expert-verified SARS-CoV-2 macromolecular structural models from X-ray crystallography, cryo-electron microscopy (cryo-EM), and nuclear magnetic resonance (NMR) to support analysis of viral proteins and nucleic acids for drug and vaccine research.


Key Features:

  • Aggregation of expert-verified structural models: Compiles SARS-CoV-2 protein and nucleic acid models verified by experts and associated with experimental methods X-ray crystallography, cryo-EM, and NMR.
  • Quality and reproducibility assessment tools: Provides a suite of tools to evaluate the quality and reproducibility of macromolecular structural models.
  • Comprehensive model curation: Centralizes curated information on experimental structural models relevant to SARS-CoV-2.

Scientific Applications:

  • Drug discovery: Enables structural analysis of viral proteins to identify and prioritize potential small-molecule or biologic targets.
  • Vaccine development: Supports structural characterization of viral components to inform antigen design and epitope mapping.
  • Basic research: Facilitates mechanistic studies of SARS-CoV-2 proteins and nucleic acids to advance understanding of coronavirus biology.

Methodology:

Structural data are collected from experimental studies (X-ray crystallography, cryo-EM, NMR) and undergo expert verification; the platform employs tools to assess the quality and reproducibility of the structural models.

Topics

Details

Added:
1/18/2021
Last Updated:
2/17/2021

Operations

Publications

Brzezinski D, Kowiel M, Cooper DR, Cymborowski M, Grabowski M, Wlodawer A, Dauter Z, Shabalin IG, Gilski M, Rupp B, Jaskolski M, Minor W. Covid‐19.bioreproducibility.org: A web resource for <scp>SARS‐CoV</scp>‐2‐related structural models. Protein Science. 2020;30(1):115-124. doi:10.1002/pro.3959. PMID:32981130. PMCID:PMC7537053.

PMID: 32981130
PMCID: PMC7537053
Funding: - Austrian Science Fund: P32821 - Narodowe Centrum Nauki: 2020/01/0/NZ1/00134 - National Institute of General Medical Sciences: R01‐GM132595

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