COVID-19 TestNorm

COVID-19 TestNorm normalizes local COVID-19 diagnostic test names in electronic health records (EHRs) by mapping them to Logical Observation Identifiers Names and Codes (LOINC) to enable standardized data integration and interoperability.


Key Features:

  • Rule-Based Normalization: Uses a rule-based approach to automatically map diverse local COVID-19 test nomenclature in EHRs to standardized LOINC codes.
  • Evaluated Accuracy: Demonstrated 97.4% accuracy on an independent test set using 568 test names collected from eight different healthcare systems.

Scientific Applications:

  • EHR Data Harmonization: Standardizes diagnostic test records across institutions to support pooled analyses of clinical data.
  • Epidemiological Studies: Enables consistent identification and comparison of COVID-19 test results for large-scale population research.
  • Clinical Trials: Facilitates reliable aggregation of diagnostic test data for multicenter trial analyses.
  • Public Health Surveillance: Supports interoperable reporting of COVID-19 testing information across health systems.

Methodology:

Applies a rule-based mapping system to convert local COVID-19 diagnostic test names to LOINC and was evaluated on 568 test names from eight healthcare systems, achieving 97.4% accuracy on an independent test set.

Topics

Collections

Details

Tool Type:
web application
Added:
1/18/2021
Last Updated:
2/17/2021

Operations

Publications

Dong X, Li J, Soysal E, Bian J, DuVall SL, Hanchrow E, Liu H, Lynch KE, Matheny M, Natarajan K, Ohno-Machado L, Pakhomov S, Reeves RM, Sitapati AM, Abhyankar S, Cullen T, Deckard J, Jiang X, Murphy R, Xu H. COVID-19 TestNorm: A tool to normalize COVID-19 testing names to LOINC codes. Journal of the American Medical Informatics Association. 2020;27(9):1437-1442. doi:10.1093/jamia/ocaa145. PMID:32569358. PMCID:PMC7337837.

PMID: 32569358
PMCID: PMC7337837
Funding: - National Center for Advancing Translational Sciences: 5U01TR002062, UL1TR003167 - National Cancer Institute: U24 CA194215 - National Institute of Health: R01AG066749, R01GM114612, U01TR002062 - Research Institute of Texas: RP160015, RP170668, RR180012 - National Science Foundation RAPID: 2027790 - Gordon and Betty Moore Foundation: 9639