COVID-TRACK

COVID-TRACK analyzes COVID-19 testing rates, incidence, hospitalizations, and deaths across US states and countries worldwide to enable comparative time-series assessment of pandemic trends.


Key Features:

  • Time-series visualization: Graphical displays enable simultaneous assessment and comparison of time trends in testing, incidence, hospitalizations, and deaths.
  • Data integration: Combines testing, incidence, hospitalization, and death data to provide a multi-modal view of epidemic trajectory.
  • Adjustments for reporting biases: Accounts for variable testing rates and reporting delays by integrating multiple metrics.
  • Transformations: Supports per capita calculations, log scale adjustments, and moving averages for normalization and smoothing.
  • Geographic comparison: Enables comparative analysis across states within the USA and countries worldwide.
  • Implementation: Implemented as a Python-based web application for computational analysis and visualization.

Scientific Applications:

  • Surveillance and monitoring: Monitor and compare epidemic trajectories across regions using integrated metrics and time-series plots.
  • Bias-aware trend detection: Detect true infectious surges by combining testing, incidence, hospitalization, and death data and applying transformations.
  • Policy evaluation: Evaluate the impact of mitigation strategies across jurisdictions through comparative time-series analyses.
  • Public health planning: Inform public health response and strategic decision-making by summarizing regional trends and normalized metrics.

Methodology:

Implemented in Python as a web application; generates graphical time-series displays and integrates testing, incidence, hospitalization, and death data using per capita calculations, log scale adjustments, and moving averages for comparative analysis across US states and countries.

Topics

Collections

Details

Tool Type:
api, web application
Programming Languages:
Python
Added:
1/18/2021
Last Updated:
11/24/2024

Operations

Publications

Zohner YEM, Morris JS. COVID-TRACK: WORLD AND USA SARS-COV-2 TESTING AND COVID-19 TRACKING. Unknown Journal. 2020. doi:10.21203/rs.3.rs-41444/v2.

Zohner YE, Morris JS. COVID-TRACK: world and USA SARS-COV-2 testing and COVID-19 tracking. BioData Mining. 2021;14(1). doi:10.1186/s13040-021-00233-2. PMID:33472672. PMCID:PMC7816158.