COVID19 Outbreak Simulator

COVID19 Outbreak Simulator simulates SARS-CoV-2 infection and transmission dynamics in heterogeneous populations to quantitatively assess the effectiveness of interventions such as quarantine, testing, social distancing, and varying community infection levels.


Key Features:

  • Population-based forward-time simulation: Models SARS-CoV-2 infection courses and virus transmission under interventions such as quarantine, testing, social distancing, and varying community infection levels.
  • Plugin-based customization: Provides a plugin system enabling user-defined operations and tailored simulation behaviors.
  • Testing strategy evaluation: Evaluates the impact of SARS-CoV-2 testing schedules on quarantine durations and related outcomes.
  • Quantitative scenario estimates: Produces quantitative estimates for COVID-19 outbreak scenarios to inform policy and risk-reduction strategies.
  • Risk assessment and continuity planning: Supports organizational risk assessment and development of continuity plans through scenario simulation.
  • Sensitivity analysis support: Performs sensitivity analyses to assess robustness of outcomes under different model assumptions.

Scientific Applications:

  • Policy development: Provides data-driven estimates to assess the potential effectiveness of public health interventions.
  • Testing strategy evaluation: Assesses how different SARS-CoV-2 testing schedules affect quarantine requirements and outcomes.
  • Scenario and sensitivity analysis: Enables exploration of how changes in model assumptions alter predicted outbreak trajectories.
  • Public health and operational planning: Informs emergency response plans and continuity planning for organizations during outbreaks.

Methodology:

The simulator employs statistical models parameterized by SARS-CoV-2 transmissibility and viral load data and incorporates testing method sensitivities, and it implements sensitivity analyses to evaluate robustness of outcomes under varying assumptions.

Collections

Details

License:
BSD-3-Clause
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
5/16/2023
Last Updated:
11/24/2024

Operations

Publications

Peng B, Pettit RW, Amos CI. Population simulations of COVID-19 outbreaks provide tools for risk assessment and continuity planning. JAMIA Open. 2021;4(3). doi:10.1093/jamiaopen/ooaa074. PMID:34505002. PMCID:PMC7928848.

Peng B, Zhou W, Pettit RW, Yu P, Matos PG, Greninger AL, McCashin J, Amos CI. Reducing COVID-19 quarantine with SARS-CoV-2 testing: a simulation study. BMJ Open. 2021;11(7):e050473. doi:10.1136/bmjopen-2021-050473. PMID:34272225. PMCID:PMC8290949.

PMID: 34272225
PMCID: PMC8290949
Funding: - National Institute of Environmental Health Sciences: T32ES027801 - Cancer Prevention Research Institute of TX: RR170048 - National Heart, Lung, and Blood Institute: 1OT2HL158258-01

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