COVID19 Outbreak Simulator
COVID19 Outbreak Simulator simulates SARS-CoV-2 infection and transmission dynamics in heterogeneous populations to quantitatively assess the effectiveness of interventions such as quarantine, testing, social distancing, and varying community infection levels.
Key Features:
- Population-based forward-time simulation: Models SARS-CoV-2 infection courses and virus transmission under interventions such as quarantine, testing, social distancing, and varying community infection levels.
- Plugin-based customization: Provides a plugin system enabling user-defined operations and tailored simulation behaviors.
- Testing strategy evaluation: Evaluates the impact of SARS-CoV-2 testing schedules on quarantine durations and related outcomes.
- Quantitative scenario estimates: Produces quantitative estimates for COVID-19 outbreak scenarios to inform policy and risk-reduction strategies.
- Risk assessment and continuity planning: Supports organizational risk assessment and development of continuity plans through scenario simulation.
- Sensitivity analysis support: Performs sensitivity analyses to assess robustness of outcomes under different model assumptions.
Scientific Applications:
- Policy development: Provides data-driven estimates to assess the potential effectiveness of public health interventions.
- Testing strategy evaluation: Assesses how different SARS-CoV-2 testing schedules affect quarantine requirements and outcomes.
- Scenario and sensitivity analysis: Enables exploration of how changes in model assumptions alter predicted outbreak trajectories.
- Public health and operational planning: Informs emergency response plans and continuity planning for organizations during outbreaks.
Methodology:
The simulator employs statistical models parameterized by SARS-CoV-2 transmissibility and viral load data and incorporates testing method sensitivities, and it implements sensitivity analyses to evaluate robustness of outcomes under varying assumptions.
Collections
Details
- License:
- BSD-3-Clause
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 5/16/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Peng B, Pettit RW, Amos CI. Population simulations of COVID-19 outbreaks provide tools for risk assessment and continuity planning. JAMIA Open. 2021;4(3). doi:10.1093/jamiaopen/ooaa074. PMID:34505002. PMCID:PMC7928848.
Peng B, Zhou W, Pettit RW, Yu P, Matos PG, Greninger AL, McCashin J, Amos CI. Reducing COVID-19 quarantine with SARS-CoV-2 testing: a simulation study. BMJ Open. 2021;11(7):e050473. doi:10.1136/bmjopen-2021-050473. PMID:34272225. PMCID:PMC8290949.
Documentation
Downloads
- Downloads pagehttps://pypi.org/project/covid19-outbreak-simulator/