covid19census

covid19census extracts and integrates COVID-19 epidemiological metrics with population-level demographic, environmental, and health-related variables to enable quantitative analysis of factors affecting COVID-19 morbidity and mortality.


Key Features:

  • Data Extraction: Functions dynamically extract COVID-19 metrics including cases, deaths, hospitalizations, and testing figures at county-level in the USA and regional-level in Italy.
  • Integration with Demographic and Health Variables: Combines health metrics with age distribution, sex, prevalence of chronic conditions (e.g., diabetes), income indices, and access to healthcare services.
  • Aggregation of Heterogeneous Sources: Aggregates data from official and unofficial heterogeneous resources into a combined population-level dataset.

Scientific Applications:

  • Risk-factor modeling: Enables modeling the effect of diabetes and other covariates on COVID-19 mortality at the county level in the USA.
  • Epidemiological analyses across populations: Supports studies of disease dynamics and public-health strategy evaluation by integrating multi-source COVID-19 and population data.

Methodology:

Functions perform dynamic extraction of COVID-19 metrics and aggregate those metrics with additional population-level demographic, environmental, and health-related data to produce a comprehensive dataset.

Topics

Collections

Details

License:
MIT
Tool Type:
library
Programming Languages:
R
Added:
6/14/2021
Last Updated:
8/23/2021

Operations

Publications

Zanettini C, Omar M, Dinalankara W, Imada EL, Colantuoni E, Parmigiani G, Marchionni L. covid19census: U.S. and Italy COVID-19 metrics and other epidemiological data. Database. 2021;2021. doi:10.1093/database/baab027. PMID:33991092. PMCID:PMC8122363.

PMID: 33991092
PMCID: PMC8122363
Funding: - NIH-NCI: P30CA006973

Links