CRITTERBASE

CRITTERBASE centralizes quality-controlled, taxonomically standardized marine biota datasets to enable integrated analyses of presence/absence, abundance, and biomass across spatial and temporal scales.


Key Features:

  • Data integration: Collates datasets from published literature, unpublished sources, original research, and online repositories.
  • Data types: Hosts presence/absence, abundance, and biomass data.
  • Sample and taxon coverage: Contains 18,644 samples and 3,664 benthic taxa with species-level information for 2,824 taxa.
  • Temporal coverage: Includes records spanning 1800–2014.
  • Sampling methods: Includes samples collected by grabs, underwater imaging, and trawls.
  • Geographic coverage: Covers regions including the Arctic, North Sea, and Antarctic.
  • Taxonomic standardization: Applies taxonomic standardization across datasets.
  • Quality control: Maintains quality-controlled datasets.
  • Metadata and provenance: Provides comprehensive metadata and direct links to primary sources for traceability.

Scientific Applications:

  • Spatio-temporal biodiversity analysis: Enables studies of biodiversity patterns and changes over time and across geographic locations.
  • Climate impact assessment: Supports assessment of climate change impacts and risks on marine ecosystems.
  • Conservation planning: Provides evidence to inform design and evaluation of marine protection policies.

Methodology:

Integrates and collates data from literature, unpublished sources, original research, and online repositories; applies quality control and taxonomic standardization; attaches comprehensive metadata and direct links to primary sources.

Topics

Details

License:
BSD-3-Clause
Cost:
Free of charge
Tool Type:
desktop application, web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
10/7/2022
Last Updated:
11/24/2024

Operations

Publications

Teschke K, Kraan C, Kloss P, Andresen H, Beermann J, Fiorentino D, Gusky M, Hansen MLS, Konijnenberg R, Koppe R, Pehlke H, Piepenburg D, Sabbagh T, Wrede A, Brey T, Dannheim J. CRITTERBASE, a science-driven data warehouse for marine biota. Scientific Data. 2022;9(1). doi:10.1038/s41597-022-01590-1. PMID:35933490. PMCID:PMC9357058.

Links