CTC-5
CTC-5 characterizes circulating tumor cells (CTCs) by combining isolation-by-size and multiparametric staining with synchronized microscopy data to support research on metastatic progression and tumor evolution.
Key Features:
- Low-Cost Isolation Pipeline: Employs an isolation by size method (ScreenCell Cyto) to capture CTCs without biomarker-based pre-selection.
- Multiparametric Characterization: Integrates histochemical morphology stains and multiparametric immunofluorescence on the same isolated CTCs to analyze single cells and clusters.
- Open-Source Software Integration: Provides open-source software that synchronizes microscopy data from multiple sources (https://github.com/CTC5/) to enable high-parameter analysis.
Scientific Applications:
- Basic CTC biology: Supports basic research into circulating tumor cell characterization across malignancies, including beyond breast, prostate, and colorectal cancers.
- Metastasis and tumor evolution studies: Enables studies of metastatic progression and tumor evolution through multiparametric analysis of CTCs.
- Biomarker-independent phenotyping: Permits investigation of CTCs from malignancies with poorly defined phenotypes via non–biomarker-based isolation.
Methodology:
Uses isolation by size (ScreenCell Cyto), histochemical morphology staining, multiparametric immunofluorescence, and synchronization of microscopy data via the project's open-source software (https://github.com/CTC5/), organized into a two-tier approach separating basic-research characterization and clinical prognostic/diagnostic testing.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Java
- Added:
- 3/15/2023
- Last Updated:
- 11/24/2024
Operations
Publications
Ffrench B, Kashdan E, Huang Y, Spillane C, Cocchiglia S, Charmsaz S, Varešlija D, O'Brien C, Scholz D, Martin C, Gallagher M, Brooks D, Brooks R, Selemidis S, Gleeson N, AbuSaadeh F, O'Riain C, Kamran W, Flavin R, Young L, O'Toole S, O'Leary J. CTC-5: A novel digital pathology approach to characterise circulating tumour cell biodiversity. Heliyon. 2023;9(1):e13044. doi:10.1016/j.heliyon.2023.e13044. PMID:36747925. PMCID:PMC9898658.