CyberSco

CyberSco performs automated, event-driven timelapse fluorescence microscopy by integrating real-time image analysis and unsupervised decision-making to adapt imaging parameters and device status for quantitative cell biology experiments.


Key Features:

  • Real-time image analysis: Performs live analysis of fluorescence images to inform acquisition decisions during experiments.
  • Unsupervised decision-making: Implements unsupervised decision-making algorithms that trigger autonomous changes in acquisition behavior.
  • Conditional/event-based acquisition: Automates acquisition by applying user-defined conditions that modify imaging parameters or device status when met.
  • Instrument integration: Integrates image analysis with microscope control to convert microscopes into responsive measurement devices.
  • Support for timelapse experiments: Provides tunability and flexibility for a wide range of fluorescence timelapse microscopy experiments.

Scientific Applications:

  • Quantitative cell biology timelapse studies: Enhances the informativeness and efficiency of quantitative timelapse fluorescence microscopy experiments.
  • Dynamic cellular process monitoring: Enables adaptive imaging conditions in real time to study dynamic cellular events and responses.
  • Model organism experimentation: Has been demonstrated as a proof of principle in budding yeast experiments.

Methodology:

Combines advanced image processing techniques and real-time fluorescence image analysis with automation protocols and unsupervised decision-making algorithms to adapt acquisition parameters and device status as new data are acquired.

Topics

Details

License:
CC-BY-NC-SA-4.0
Tool Type:
desktop application
Programming Languages:
JavaScript, Python, C++
Added:
10/3/2022
Last Updated:
11/24/2024

Operations

Publications

Chiron L, Le Bec M, Cordier C, Pouzet S, Milunov D, Banderas A, Di Meglio J, Sorre B, Hersen P. CyberSco.Py an open-source software for event-based, conditional microscopy. Scientific Reports. 2022;12(1). doi:10.1038/s41598-022-15207-5. PMID:35803978. PMCID:PMC9270370.

PMID: 35803978
PMCID: PMC9270370
Funding: - European Research Council: 724813