Dalton Project

Dalton Project provides Python-based molecular- and electronic-structure simulations of complex systems by interfacing advanced quantum chemistry codes (Dalton, LSDalton) and integrating the PyFraME fragmentation and parameterization package.


Key Features:

  • Python integration: A Python-based platform interface for coordinating quantum-chemical computations and libraries.
  • Dalton and LSDalton access: Direct access to the Dalton and LSDalton software suites for quantum chemistry calculations.
  • PyFraME integration: Incorporates PyFraME to automate fragmentation and parameterization within complex molecular environments.
  • Intermediate-data exposure: Exposes intermediate computational data, including integrals, as NumPy arrays for downstream processing.
  • Molecular- and electronic-structure simulations: Supports molecular- and electronic-structure simulations of complex systems using advanced quantum chemistry codes.
  • Environment fragmentation and sampling: Provides capabilities for environment fragmentation and configuration-space sampling in biochemical systems.
  • Library communication framework: Streamlines library communication and interaction through a unified platform framework.
  • Modular architecture: Modular software architecture to accommodate additional libraries and distributed integration.

Scientific Applications:

  • Quantum-chemical analysis: Detailed quantum-chemical analyses of molecular electronic structure using Dalton and LSDalton.
  • Fragmentation and parameterization studies: Automated fragmentation and parameterization workflows for complex molecular environments via PyFraME.
  • Biochemical system simulations: Simulation of molecular interactions and dynamics in biochemical systems using configuration-space sampling.
  • Integral extraction and post-processing: Extraction and NumPy-based post-processing of intermediate integrals for further analysis.

Methodology:

Interfaces Dalton and LSDalton quantum chemistry codes, integrates PyFraME for automated fragmentation and parameterization, exposes intermediate data (including integrals) as NumPy arrays, and supports molecular- and electronic-structure simulations and configuration-space sampling.

Topics

Details

License:
GPL-3.0
Tool Type:
workflow
Programming Languages:
Python
Added:
1/18/2021
Last Updated:
2/22/2021

Operations

Publications

Olsen JMH, Reine S, Vahtras O, Kjellgren E, Reinholdt P, Hjorth Dundas KO, Li X, Cukras J, Ringholm M, Hedegård ED, Di Remigio R, List NH, Faber R, Cabral Tenorio BN, Bast R, Pedersen TB, Rinkevicius Z, Sauer SPA, Mikkelsen KV, Kongsted J, Coriani S, Ruud K, Helgaker T, Jensen HJA, Norman P. Dalton Project: A Python platform for molecular- and electronic-structure simulations of complex systems. The Journal of Chemical Physics. 2020;152(21). doi:10.1063/1.5144298. PMID:32505165.

PMID: 32505165
Funding: - Vetenskapsrådet: 2018-4343 - Det Frie Forskningsråd: 7014-00050B, 7014-00258B - Norges Forskningsråd: 231571, 250743, 261873, 262695, 274918 - European Commission: 745967, 765739 - H2020 European Research Council: 279619

Documentation

Links