DANTE

Domain based ANnotation of Transposable Elements (DANTE) uses database of Viridiplantae (Metazoa in progress) protein domains derived from transposable elements (Neumann at al 2019) Domains searching is accomplished engaging LASTAL alignment tool. Domains are subsequently annotated and classified using phylogenetic approach.

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Topics

Sequence analysis

Collections

ELIXIR-CZ

Details

License:: GPL-3.0
Maturity:: Emerging
Cost:: Free of charge
Tool Type:: api, command-line tool
Operating Systems:: Linux
Programming Languages:: Python, R
Added:: 10/8/2020
Last Updated:: 4/29/2021

Operations

Downloads

Source code
https://github.com/kavonrtep/dante

Links

Repository

https://github.com/kavonrtep/dante

Other

http://repeatexplorer.org/?page_id=832

Galaxy service

https://repeatexplorer-elixir.cerit-sc.cz/

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