DataColor
DataColor visualizes diverse high-throughput omics datasets using color mapping and analytical algorithms to reveal patterns in genetic, proteomic, and metabolomic data.
Key Features:
- Extensive Toolkit: 23 distinct visualization and analysis tools with over 600 configurable parameters for data-specific configuration.
- Color Spectrum Mapping: Uses full-spectrum color mapping to represent data across diverse types and magnitudes for pattern recognition.
- Data Clustering: Implements clustering algorithms to group similar data points and reveal underlying structures.
- Normalization: Applies normalization methods to adjust values to a common scale for cross-dataset comparison.
- Squarified Layouts: Generates squarified layout algorithms to organize visual elements spatially for optimized readability.
- Multi-scale Parameterization: Supports parameter configurations that enable both high-level overviews and detailed enhanced visualizations.
Scientific Applications:
- Omics Data Visualization: Visualizes large-scale datasets from genomics, proteomics, and metabolomics to expose complex patterns and relationships.
- Biomedical and Basic Research: Supports exploratory analysis in basic research and applied biomedical investigations using outputs from high-throughput omics technologies.
Methodology:
Implements full-spectrum color mapping, data clustering algorithms, normalization to common scales, and squarified layout algorithms.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- desktop application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 6/17/2024
- Last Updated:
- 11/24/2024
Operations
Publications
He S, Dong W, Chen J, Zhang J, Lin W, Yang S, Xu D, Zhou Y, Miao B, Wang W, Chen F. DataColor: unveiling biological data relationships through distinctive color mapping. Horticulture Research. 2023;11(2). doi:10.1093/hr/uhad273. PMID:38333729. PMCID:PMC10852383.
DOI: 10.1093/hr/uhad273
PMID: 38333729
PMCID: PMC10852383
Funding: - Hainan Province Science and Technology Special Fund: ZDYF2023XDNY050
- National Natural Science Foundation of China-CG joint foundation: 3181101517
- National Natural Science Foundation of China: 32472614
Links
Repository
https://github.com/frankgenome/DataColor