DBDIpy
DBDIpy analyzes untargeted, time-resolved plasma ionization mass spectrometry (MS) datasets to identify in-source fragments, detect adducts and competing ionization pathways for accurate interpretation of volatiles, aerosols, and metabolomics samples.
Key Features:
- In-Source Fragment Identification: Detects and characterizes in-source fragments generated during plasma ionization.
- Competing Ionization Pathway Elucidation: Identifies and differentiates rival ionization pathways producing multiple ion species for the same analytes in time-sensitive datasets.
- Adduct and Plasma-Specific Ion Species Detection: Detects adducts and other ion species specific to plasma ionization that can confound untargeted analysis.
- Untargeted Metabolomics Processing Functions: Provides elementary processing functions tailored to untargeted metabolomics data from plasma ionization MS.
- Analysis of Volatiles and Aerosols: Targets the interpretation of ionization behavior in studies of volatiles and aerosols commonly analyzed by plasma ionization.
Scientific Applications:
- Volatile and Aerosol Analysis: Interpret complex ionization patterns in studies of volatiles and aerosols.
- Untargeted Metabolomics: Support formal analysis and preprocessing of untargeted metabolomics datasets acquired by plasma ionization MS.
- Ionization Mechanism Studies: Dissect ion formation mechanisms by combining in-source fragment and pathway detection.
- Time-Resolved MS Experiments: Resolve temporal changes in ion species and pathway dominance within real-time plasma ionization experiments.
Methodology:
Computational methods perform detection and analysis of in-source fragments, identification of adducts and competing ionization pathways, and provide elementary processing functions for untargeted, time-sensitive plasma ionization MS datasets.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 3/17/2023
- Last Updated:
- 3/17/2023
Operations
Publications
Weidner L, Hemmler D, Rychlik M, Schmitt-Kopplin P. DBDIpy: a Python library for processing of untargeted datasets from real-time plasma ionization mass spectrometry. Bioinformatics. 2023;39(2). doi:10.1093/bioinformatics/btad088. PMID:36786403. PMCID:PMC9942549.