dbMisLoc
dbMisLoc catalogs experimentally validated protein mis-localization events and their associated conditions to support research into disease mechanisms and cellular responses.
Key Features:
- Manual curation: Records were manually curated from primary literature to ensure entry-level provenance and experimental validation.
- Comprehensive data records: Each entry reports the protein's normal and mis-localized states, the conditions leading to mis-localization, and literature references.
- Condition categories: Mis-localization events are annotated across 14 categories of conditions, including diseases, drug treatments, and environmental stresses.
- BLAST search integration: The database incorporates a BLAST search engine to enable sequence-based identification of proteins reported as mis-localized.
Scientific Applications:
- Study of disease mechanisms: Enable investigation of how protein mis-localization contributes to complex disorders.
- Biomarker and target discovery: Support identification of candidate biomarkers or therapeutic targets linked to localization changes.
- Comparative and functional analysis: Facilitate sequence-based comparative studies and hypothesis generation via BLAST-derived similarity matches.
Methodology:
Entries were manually curated from the literature and the database integrates a BLAST search engine for sequence-based queries.
Topics
Details
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- JavaScript
- Added:
- 9/15/2023
- Last Updated:
- 9/15/2023
Operations
Data Inputs & Outputs
Database search
Inputs
Outputs
Publications
Wang R, Luo T, Guo Y, Yang Z, Zhang H, Hao H, Du P. dbMisLoc: A Manually Curated Database of Conditional Protein Mis-localization Events. Interdisciplinary Sciences: Computational Life Sciences. 2023;15(3):433-438. doi:10.1007/s12539-023-00564-0. PMID:37000408.
PMID: 37000408
Funding: - National Natural Science Foundation of China: 61872268
Links
Repository
https://github.com/quinlanW/dbMisLoc