dbxreport

dbxreport validates dbx database index structures and generates reports on internal database configurations and states within the EMBOSS suite to assess database integrity.


Key Features:

  • Database Validation: Performs validation checks to ensure the integrity and consistency of indexes within dbx databases.
  • Internal Reporting: Generates detailed reports on internal configurations and states of dbx databases, including database health and performance metrics.
  • Integration with EMBOSS: Operates as part of the EMBOSS dbx framework and interoperates with EMBOSS-managed databases.

Scientific Applications:

  • Molecular Biology Research: Supports reliable bioinformatics analyses by verifying database integrity and reporting internal states relevant to molecular biology studies.
  • Data Management: Aids management of large-scale biological datasets and facilitates data retrieval and analysis for genomic studies and high-throughput experiments.

Methodology:

Operates within the EMBOSS framework and leverages EMBOSS's C programming libraries to validate dbx index structures and produce internal database reports.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Documentation

Downloads

Links