dbxreport
dbxreport validates dbx database index structures and generates reports on internal database configurations and states within the EMBOSS suite to assess database integrity.
Key Features:
- Database Validation: Performs validation checks to ensure the integrity and consistency of indexes within dbx databases.
- Internal Reporting: Generates detailed reports on internal configurations and states of dbx databases, including database health and performance metrics.
- Integration with EMBOSS: Operates as part of the EMBOSS dbx framework and interoperates with EMBOSS-managed databases.
Scientific Applications:
- Molecular Biology Research: Supports reliable bioinformatics analyses by verifying database integrity and reporting internal states relevant to molecular biology studies.
- Data Management: Aids management of large-scale biological datasets and facilitates data retrieval and analysis for genomic studies and high-throughput experiments.
Methodology:
Operates within the EMBOSS framework and leverages EMBOSS's C programming libraries to validate dbx index structures and produce internal database reports.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Indexing
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.