dbxstat

dbxstat generates statistics for dbx-formatted databases within the EMBOSS suite to quantify database contents and configurations for bioinformatics database management and analysis.


Key Features:

  • Statistics generation: Produces detailed statistics for dbx-formatted databases, reporting metrics on database contents and configuration.
  • EMBOSS integration: Operates within the EMBOSS suite and interoperates with other EMBOSS applications and libraries.
  • Database configuration and management: Provides information useful for configuring and managing dbx databases within the EMBOSS framework.
  • Customization and development support: Exposes C programming libraries to extend functionality and integrate with custom EMBOSS applications.

Scientific Applications:

  • Database quality control: Analyze database structures and contents for quality control and optimization.
  • Data sharing and collaboration: Provide statistical summaries to support data sharing and collaboration.
  • Genomic and proteomic studies: Support large-scale genomic and proteomic studies that require robust database handling.

Methodology:

Extracts and presents detailed statistics for dbx-formatted databases using EMBOSS programming libraries.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Documentation

Downloads

Links