dbxstat
dbxstat generates statistics for dbx-formatted databases within the EMBOSS suite to quantify database contents and configurations for bioinformatics database management and analysis.
Key Features:
- Statistics generation: Produces detailed statistics for dbx-formatted databases, reporting metrics on database contents and configuration.
- EMBOSS integration: Operates within the EMBOSS suite and interoperates with other EMBOSS applications and libraries.
- Database configuration and management: Provides information useful for configuring and managing dbx databases within the EMBOSS framework.
- Customization and development support: Exposes C programming libraries to extend functionality and integrate with custom EMBOSS applications.
Scientific Applications:
- Database quality control: Analyze database structures and contents for quality control and optimization.
- Data sharing and collaboration: Provide statistical summaries to support data sharing and collaboration.
- Genomic and proteomic studies: Support large-scale genomic and proteomic studies that require robust database handling.
Methodology:
Extracts and presents detailed statistics for dbx-formatted databases using EMBOSS programming libraries.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Documentation
Terms of use
http://emboss.open-bio.org/html/dev/ch01s01.htmlCitation instructions
http://emboss.open-bio.org/html/use/pr02s04.html