DCMQI

DCMQI converts imaging research formats to standard DICOM representations to enable standardized encoding and sharing of PET/CT quantitative imaging analysis results for quantitative imaging biomarker development.


Key Features:

  • Format conversion and standards-based representation: Conversion routines create standards-based DICOM representations of imaging analysis results and related clinical data.
  • DICOM modeling: Leverages DICOM components to model various data types generated during quantitative imaging analysis.
  • DICOM object support: Uses DICOM Real World Value Mapping, Segmentation, and Structured Reporting objects for compliant representation of PET/CT QI results.
  • API and developer toolkit: Provides an Application Programming Interface and conversion routines for programmatic creation of DICOM-encoded analysis objects.
  • DCMTK enhancements: Introduces new API abstractions to DCMTK to simplify DICOM encoding tasks and support consistent object generation.
  • SUV normalization: Implements normalization of Standardized Uptake Value (SUV) as part of quantitative PET/CT analysis.
  • Tumor segmentation: Supports manual and semi-automatic tumor segmentation approaches.
  • Reference region segmentation: Performs automatic segmentation of reference regions used in analysis.
  • Volumetric measurements: Extracts volumetric measurements from segmentations for quantitative assessment.
  • Interoperability validation: Encoded objects are validated for use in systems supporting the DICOM standard.
  • Data deposition: Resulting datasets have been deposited in the QIN-HEADNECK collection of The Cancer Imaging Archive (TCIA).

Scientific Applications:

  • PET/CT quantitative imaging biomarker development: Enables standardized representation and exchange of PET/CT QI analysis outputs for biomarker research.
  • Assessment of treatment response in head and neck cancer (HNC): Supports workflows for evaluating treatment response in HNC using SUV normalization, segmentation, and volumetric measurements.

Methodology:

Normalization of Standardized Uptake Value (SUV); tumor segmentation using manual and semi-automatic approaches; automatic segmentation of reference regions; extraction of volumetric measurements from segmentations; conversion routines producing DICOM Real World Value Mapping, Segmentation, and Structured Reporting objects; and DCMTK API abstraction enhancements for DICOM encoding.

Topics

Details

Programming Languages:
Shell, C++, Python
Added:
1/9/2020
Last Updated:
1/11/2021

Operations

Publications

Fedorov A, Clunie D, Ulrich E, Bauer C, Wahle A, Brown B, Onken M, Riesmeier J, Pieper S, Kikinis R, Buatti J, Beichel RR. DICOM for quantitative imaging biomarker development: A standards based approach to sharing of clinical data and structured PET/CT analysis results in head and neck cancer research. Unknown Journal. 2016. doi:10.7287/peerj.preprints.1541v2. PMID:27257542. PMCID:PMC4888317.

Fedorov A, Clunie D, Ulrich E, Bauer C, Wahle A, Brown B, Onken M, Riesmeier J, Pieper S, Kikinis R, Buatti J, Beichel RR. DICOM for quantitative imaging biomarker development: a standards based approach to sharing clinical data and structured PET/CT analysis results in head and neck cancer research. PeerJ. 2016;4:e2057. doi:10.7717/peerj.2057. PMID:27257542. PMCID:PMC4888317.

PMID: 27257542
PMCID: PMC4888317
Funding: - National Institutes of Health, National Cancer Institute: U01 CA140206, U01 CA151261, U24 CA180918 - National Institutes of Health (NIH) Clinical and Translational Science Award (CTSA) program: U54 TR001356

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