DCP

DCP automates construction of anatomical brain networks from diffusion tensor imaging (DTI) data to enable structural connectome analysis.


Key Features:

  • Automated Multi-subject Processing: Automates construction of DTI-derived brain networks across multiple subjects and supports datasets in DICOM and NIfTI formats.
  • Integration with Post-processing Packages: Integrates modules from Diffusion Toolkit, DiffusionKit, SPM, and MRIcron for DTI post-processing and network generation.
  • Comprehensive Workflow: Implements the end-to-end steps required to construct anatomical connectivity patterns from initial data handling through final network generation.
  • Quality Control Output: Produces per-subject folders containing quality control metrics and registration results for verification of processing outcomes.
  • MATLAB-based Implementation: Provides a MATLAB-based pipeline with compatibility for Windows operating systems.

Scientific Applications:

  • Structural Connectomics: Generation of DTI-derived structural connectomes and anatomical connectivity patterns for network analysis.
  • Neuroscience Research: Quantitative description of anatomical connectivity to support studies of brain structure–function relationships.
  • Neurological Disorder Studies: Comparative analysis of connectivity alterations in neurological and psychiatric disorders.
  • Developmental and Aging Studies: Investigation of developmental changes and aging-related alterations in brain connectivity.

Methodology:

MATLAB-based pipeline that integrates Diffusion Toolkit, DiffusionKit, SPM, and MRIcron to process DTI datasets in DICOM or NIfTI formats and produce anatomical connectivity networks along with quality-control metrics and registration results.

Topics

Details

Tool Type:
command-line tool
Programming Languages:
MATLAB
Added:
1/18/2021
Last Updated:
2/22/2021

Operations

Publications

Huang W, Shu N. DCP: a pipeline toolbox for diffusion connectome. Unknown Journal. 2020. doi:10.1101/2020.04.16.044453.