DCTL

DCTL applies deep learning-based cycle transfer learning to classify apicomplexan parasites in microscopic images by exploiting morphological similarity between parasite shapes and macroscopic objects.


Key Features:

  • Deep Cycle Transfer Learning: Links microscopic parasite morphologies to macroscopic object images to transfer visual features for classification.
  • Deep learning microscopic image analysis: Uses deep learning for automated classification of microscopy images containing parasites.
  • Morphological mapping: Leverages shape correspondences for Toxoplasma (banana-shaped), Plasmodium (ring-shaped), Babesia (pear-shaped), and erythrocytes (apple) by mapping to bananas, rings, pears, and apples respectively.
  • Empirical validation dataset: Evaluated on a dataset of 24,358 microscopic images containing various apicomplexan parasites.
  • Performance metrics: Reported average classification accuracy of 95.7% and area under the curve (AUC) of 0.995 across parasite types.

Scientific Applications:

  • Automated parasite detection: Detection and classification of apicomplexan parasites including Toxoplasma, Plasmodium, and Babesia in microscopy images.
  • Diagnostic screening support: Support for high-throughput microscopy analysis to assist clinical and research workflows.
  • Population-scale surveillance: Facilitation of large-scale screening and surveillance efforts, including use cases in resource-limited settings.

Methodology:

DCTL implements a deep learning-based cycle transfer learning approach that maps parasite microscopic morphologies to macroscopic object images and was trained and evaluated on 24,358 microscopic images, yielding reported accuracy and AUC metrics.

Topics

Details

Tool Type:
command-line tool
Programming Languages:
Python
Added:
1/18/2021
Last Updated:
2/22/2021

Operations

Publications

Li S, Yang Q, Jiang H, Cortés-Vecino JA, Zhang Y. Parasitologist-level classification of apicomplexan parasites and host cell with deep cycle transfer learning (DCTL). Bioinformatics. 2020;36(16):4498-4505. doi:10.1093/bioinformatics/btaa513. PMID:32413103.

PMID: 32413103
Funding: - Natural Science Foundation of Shenzhen City: JCYJ20180306172131515