DeathDomain

DeathDomain compiles and curates protein–protein interactions within the death domain (DD) superfamily to support analysis of signaling pathways involved in apoptosis, inflammation, necrosis, and immune cell signaling.


Key Features:

  • Curated Protein–Protein Interaction Dataset: Contains 175 protein–protein interaction pairs among 99 death domain superfamily proteins curated from 295 peer-reviewed studies.
  • Death Domain Superfamily Coverage: Catalogs interactions among proteins belonging to the death domain (DD) superfamily involved in cell signaling processes.
  • Literature-Derived Annotations: Provides detailed annotations including experimental resources, analytical methods, and domain structure information associated with each protein–protein interaction.

Scientific Applications:

  • Apoptosis Signaling Research: Supports investigation of protein interaction networks regulating programmed cell death.
  • Inflammation and Immune Signaling Studies: Enables analysis of signaling pathways mediated by death domain superfamily proteins.
  • Disease Mechanism Analysis: Facilitates exploration of molecular interactions associated with cancers, neurodegenerative disorders, and immune-related diseases.

Methodology:

DeathDomain integrates protein–protein interaction data for death domain superfamily proteins through manual curation of peer-reviewed literature and annotates interactions with associated experimental and structural information.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
JavaScript, Ruby
Added:
3/30/2017
Last Updated:
12/10/2018

Operations

Publications

Kwon D, et al. A comprehensive manually curated protein-protein interaction database for the Death Domain superfamily. Nucleic Acids Res. 2012; 40:D331-6. doi: 10.1093/nar/gkr1149

PMID: 22135292

Documentation