DeepReac+

DeepReac+ predicts chemical reaction outcomes and identifies optimal reaction conditions by combining a graph-neural-network-based model (DeepReac) with deep active learning applied to 2D molecular structures.


Key Features:

  • Graph-neural-network model (DeepReac): The DeepReac architecture directly processes 2D molecular structures to generate representations for reaction prediction.
  • Deep active learning strategies: Integrates active learning to select informative data points and reduce the number of experiments and labeled examples required for training.
  • Universality across tasks: Adapts to various prediction tasks without extensive model reconfiguration by using 2D structural inputs.
  • Outcome prediction and condition optimization: Produces predictions of chemical reaction outcomes and assists in identifying optimal reaction conditions.
  • Demonstrated performance: Achieves state-of-the-art results with minimal labeled data across three diverse chemical reaction datasets in multiple scenarios.

Scientific Applications:

  • Reaction outcome prediction: Predicting chemical reaction outcomes from 2D molecular inputs.
  • Reaction-condition optimization: Guiding selection of optimal reaction conditions while minimizing experimental runs through active learning.
  • Low-data reaction modeling: Enabling accurate modeling and prediction of reactions with minimal labeled experimental data.
  • AI-aided chemical synthesis: Assisting exploration and optimization of complex chemical reactions using machine-learned models and active learning.

Methodology:

Employs a graph-neural-network-based model (DeepReac) that directly processes 2D molecular structures and integrates deep active learning strategies to select informative data points and reduce required labeled experiments; validated on three diverse chemical reaction datasets.

Topics

Details

License:
Apache-2.0
Cost:
Free of charge
Tool Type:
workflow
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
6/7/2022
Last Updated:
6/7/2022

Operations

Publications

Gong Y, Xue D, Chuai G, Yu J, Liu Q. DeepReac+: deep active learning for quantitative modeling of organic chemical reactions. Chemical Science. 2021;12(43):14459-14472. doi:10.1039/d1sc02087k. PMID:34880997. PMCID:PMC8580052.

PMID: 34880997
PMCID: PMC8580052
Funding: - National Key Research and Development Program of China: 2016YFC1303205, 2017YFC0908500 - National Natural Science Foundation of China: 31970638, 61572361, 62002264 - China Postdoctoral Science Foundation: 2019M651575 - Natural Science Foundation of Shanghai: 17ZR1449400