DeeZ

DeeZ (a.k.a. DeeNA-Zip) is a tool for compressing SAM/BAM files, or more formally, a tool which does reference-based compression by local assembly

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Topics

Assembly DNA

Details

Tool Type:: command-line tool
Operating Systems:: Linux
Programming Languages:: Java, C++
Added:: 12/18/2017
Last Updated:: 11/25/2024

Operations

Sequence assembly

Publications

Hach F, Numanagic I, Sahinalp SC. DeeZ: reference-based compression by local assembly. Nature Methods. 2014;11(11):1082-1084. doi:10.1038/nmeth.3133. PMID:25357237.

DOI: 10.1038/nmeth.3133

PMID: 25357237

Documentation

General

https://github.com/sfu-compbio/deez

Links

Software catalogue

http://www.mybiosoftware.com/deez-a-tool-for-compressing-sambam-files.html

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