Delila-PY
Delila-PY leverages the Delila software suite to identify and analyze DNA binding motifs for elucidating regulatory mechanisms controlling gene expression.
Key Features:
- Streamlined pipeline: Automates Delila-based analyses to perform motif prediction from DNA sequence inputs.
- Integration with Delila Suite: Executes algorithms from the Delila software suite to identify and analyze DNA binding motifs.
- Flexibility and Control: Provides configurable parameters to customize motif discovery and analysis workflows.
Scientific Applications:
- Motif prediction: Predicts potential DNA binding motifs to elucidate regulatory mechanisms.
- Gene expression studies: Identifies binding sites and associated motifs to inform analyses of transcriptional regulation across organisms.
Methodology:
Uses algorithms from the Delila software suite to analyze DNA sequences and predict DNA binding motifs, with the pipeline automating these algorithmic steps.
Topics
Details
- Tool Type:
- command-line tool
- Programming Languages:
- C, Python
- Added:
- 9/8/2021
- Last Updated:
- 9/13/2021
Operations
Publications
Myers KS, Place M, Kominek J, Noguera DR, Donohue TJ. Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs. Microbiology Resource Announcements. 2021;10(15). doi:10.1128/mra.00160-21. PMID:33858925. PMCID:PMC8050967.
DOI: 10.1128/MRA.00160-21
PMID: 33858925
PMCID: PMC8050967
Funding: - U.S. Department of Energy: DE-SC0018409
Downloads
- Container filehttps://hub.docker.com/r/glbrc/delila
Links
Issue tracker
https://github.com/GLBRC/delila/issues