descseq
descseq alters sequence descriptions to support accurate sequence annotation in molecular biology workflows.
Key Features:
- Integration with EMBOSS C libraries: descseq leverages the EMBOSS C programming libraries to provide core sequence-processing functionality.
- Sequence description alteration: descseq performs targeted modifications of sequence description lines for annotation purposes.
- Customization via ACD files: descseq supports customization and creation of application interfaces through Application Configuration Description (ACD) files.
- Database configuration: descseq supports database configuration capabilities within the EMBOSS environment.
- Extensibility for tool development: descseq enables development and adaptation of new bioinformatics functionality using EMBOSS libraries.
Scientific Applications:
- Sequence annotation: altering sequence descriptions to ensure accurate annotation in molecular biology workflows.
- Genomic research: use in genomic workflows that require precise manipulation of sequence description information.
- Proteomics: application in proteomics workflows where correct sequence description and annotation are required.
Methodology:
descseq operates by leveraging EMBOSS C libraries, supports customization through ACD files, and integrates with EMBOSS database configuration mechanisms.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Documentation
Terms of use
http://emboss.open-bio.org/html/dev/ch01s01.htmlCitation instructions
http://emboss.open-bio.org/html/use/pr02s04.html