DI2

DI2 discretizes heterogeneous clinical and molecular variables using an unsupervised, prior-free, multi-item approach to produce robust discrete representations for downstream associative modeling and classification.


Key Features:

  • Unsupervised, prior-free discretization: Performs discretization without predefined distributional assumptions or prior parameters.
  • Multi-item assignment: Assigns multiple items to values near discretization boundaries to enhance robustness around border values.
  • Skewed-distribution handling: Explicitly manages variables with arbitrarily skewed distributions common in biological datasets.
  • Outlier-aware, data-regularity preservation: Considers underlying data regularities and the presence of outlier values to respect natural data structure.
  • Compatibility with associative models and classifiers: Produces discretizations suited to state-of-the-art associative models and classifiers capable of handling border values.
  • Statistical validation: Statistical tests reported demonstrate that DI2 generally outperforms well-established discretization methods with statistical significance.

Scientific Applications:

  • Associative modeling and biomedical data mining: Provides discrete inputs compatible with state-of-the-art associative models used for biomedical data mining.
  • Classification and predictive modeling: Improves predictive accuracy in classification tasks by accommodating border values and dataset heterogeneity.
  • Analysis of clinical and molecular variables: Handles the diversity and heterogeneity of clinical and molecular variables within biomedical datasets.
  • Method benchmarking and comparison: Supports comparative evaluation of discretization methods via statistical performance assessment.

Methodology:

Unsupervised, prior-free multi-item discretization that assigns multiple items near boundaries and accounts for arbitrarily skewed distributions, underlying data regularities, and outlier values.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux
Programming Languages:
Python
Added:
2/16/2022
Last Updated:
2/16/2022

Operations

Publications

Alexandre L, Costa RS, Henriques R. DI2: prior-free and multi-item discretization of biological data and its applications. BMC Bioinformatics. 2021;22(1). doi:10.1186/s12859-021-04329-8. PMID:34496758. PMCID:PMC8425008.

PMID: 34496758
PMCID: PMC8425008
Funding: - Fundação para a Ciência e a Tecnologia: CEECIND/01399/2017, DSAIPA/DS/0042/2018, DSAIPA/DS/0111/2018, UIDB/50006/2020, UIDB/50021/2020, UIDP/50006/2020