discordant
The "Discordant" method introduces an approach for identifying differential correlations in molecular feature pairs across distinct biological groups. Traditional methods focus on detecting the largest differences in correlation coefficients, often overlooking feature pairs that switch from uncorrelated in one condition to correlated in another. This transition can indicate specific biological interactions relevant to understanding complex disease mechanisms or phenotypic variations.
Discordant addresses this gap by categorizing correlation types for each group, enabling the detection of such feature pairs. Through comparisons with existing differential correlation methods using both simulated data and real biological datasets across various types of -omics data, Discordant has demonstrated its capability to identify phenotype-related features at a rate similar to or better than current approaches. It achieves this while maintaining computational efficiency and ease of use, making it a valuable tool for researchers analyzing complex biological data.
Topic
Genetics;Microarray experiment;RNA-seq;Statistics and probability
Detail
Operation: Correlation
Software interface: Library
Language: R
License: GNU General Public License, version 2
Cost: Free
Version name: 1.26.0
Credit: National Library of Medicine, National Heart, Lung, and Blood Institute.
Input: -
Output: -
Contact: McGrath Max max.mcgr@h@ucdenver.edu
Collection: -
Maturity: Stable
Publications
- The discordant method: a novel approach for differential correlation.
- Siska C, et al. The discordant method: a novel approach for differential correlation. The discordant method: a novel approach for differential correlation. 2016; 32:690-6. doi: 10.1093/bioinformatics/btv633
- https://doi.org/10.1093/bioinformatics/btv633
- PMID: 26520855
- PMC: PMC5006287
Download and documentation
Source: https://bioconductor.org/packages/release/bioc/src/contrib/discordant_1.26.0.tar.gz
Documentation: https://bioconductor.org/packages/release/bioc/manuals/discordant/man/discordant.pdf
Home page: http://bioconductor.org/packages/release/bioc/html/discordant.html
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