DnnRMST
DnnRMST predicts restricted mean survival time (RMST) from baseline covariates in time-to-event data using deep neural networks.
Key Features:
- Direct Relationship Modeling: Establishes a direct relationship between RMST and baseline covariates and predicts RMST at multiple time points simultaneously.
- Transformation to Pseudo Observations: Transforms each subject's survival time into jackknife pseudo observations that serve as quantitative response variables for model training.
- Information Sharing Across Times: Jointly models RMST at multiple times to enable information sharing across time points and improve prediction accuracy.
- Model Evaluation and Validation: Evaluated using extensive simulation studies and applied to three real datasets.
- Interpretability Features: Identifies subject-specific predictors and assesses their importance in risk prediction.
Scientific Applications:
- Clinical Research: Provides RMST estimates and covariate effects for analysis of time-to-event outcomes in clinical studies.
- Personalized Medicine: Highlights subject-specific predictors to support individualized risk profiling and decision-making.
Methodology:
Survival times are transformed into jackknife pseudo observations used as quantitative responses to train a deep neural network that jointly models RMST at multiple time points, with an architecture designed to facilitate information sharing across times.
Topics
Details
- Tool Type:
- command-line tool, library
- Added:
- 3/19/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Zhao L. Deep neural networks for predicting restricted mean survival times. Bioinformatics. 2020;36(24):5672-5677. doi:10.1093/bioinformatics/btaa1082. PMID:33399818. PMCID:PMC8023687.
PMID: 33399818
PMCID: PMC8023687
Funding: - The Nephrotic Syndrome Study Network Consortium: U54-DK-083912
- Michigan Institute for Clinical and Health Research: UL1TR002240