DnnRMST

DnnRMST predicts restricted mean survival time (RMST) from baseline covariates in time-to-event data using deep neural networks.


Key Features:

  • Direct Relationship Modeling: Establishes a direct relationship between RMST and baseline covariates and predicts RMST at multiple time points simultaneously.
  • Transformation to Pseudo Observations: Transforms each subject's survival time into jackknife pseudo observations that serve as quantitative response variables for model training.
  • Information Sharing Across Times: Jointly models RMST at multiple times to enable information sharing across time points and improve prediction accuracy.
  • Model Evaluation and Validation: Evaluated using extensive simulation studies and applied to three real datasets.
  • Interpretability Features: Identifies subject-specific predictors and assesses their importance in risk prediction.

Scientific Applications:

  • Clinical Research: Provides RMST estimates and covariate effects for analysis of time-to-event outcomes in clinical studies.
  • Personalized Medicine: Highlights subject-specific predictors to support individualized risk profiling and decision-making.

Methodology:

Survival times are transformed into jackknife pseudo observations used as quantitative responses to train a deep neural network that jointly models RMST at multiple time points, with an architecture designed to facilitate information sharing across times.

Topics

Details

Tool Type:
command-line tool, library
Added:
3/19/2021
Last Updated:
11/24/2024

Operations

Publications

Zhao L. Deep neural networks for predicting restricted mean survival times. Bioinformatics. 2020;36(24):5672-5677. doi:10.1093/bioinformatics/btaa1082. PMID:33399818. PMCID:PMC8023687.

PMID: 33399818
PMCID: PMC8023687
Funding: - The Nephrotic Syndrome Study Network Consortium: U54-DK-083912 - Michigan Institute for Clinical and Health Research: UL1TR002240