drda
drda performs nonlinear dose-response model fitting and statistical evaluation in R to support analysis in pharmacology, toxicology, epidemiology, and drug sensitivity screening.
Key Features:
- Model fitting by least squares: Fits dose-response models using the method of least squares with a strategic choice of starting points to improve accuracy and convergence.
- Goodness-of-fit tests and model selection: Provides goodness-of-fit testing and model selection procedures to assess model adequacy and choose among competing dose-response models.
- Advanced optimization techniques: Implements the Newton method with a trust-region approach using analytical gradients and Hessian matrices for parameter estimation.
Scientific Applications:
- Pharmacology: Characterizes drug effect curves and estimates potency and efficacy parameters from dose-response experiments.
- Toxicology: Quantifies toxic responses across dose ranges and supports toxicological assessment via dose-response modeling.
- Epidemiology: Analyzes exposure–response relationships in population-level dose-response studies.
- Drug sensitivity screening: Fits and evaluates dose-response models for large-scale drug sensitivity screening datasets.
Methodology:
Computational methods explicitly include least squares dose-response fitting with strategic starting points, Newton optimization with a trust-region framework using analytical gradients and Hessians, plus goodness-of-fit testing and model selection.
Topics
Details
- License:
- MIT
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 11/3/2021
- Last Updated:
- 11/3/2021
Operations
Publications
Malyutina A, Tang J, Pessia A. drda: An R package for dose-response data analysis. Unknown Journal. 2021. doi:10.1101/2021.06.07.447323.