drda

drda performs nonlinear dose-response model fitting and statistical evaluation in R to support analysis in pharmacology, toxicology, epidemiology, and drug sensitivity screening.


Key Features:

  • Model fitting by least squares: Fits dose-response models using the method of least squares with a strategic choice of starting points to improve accuracy and convergence.
  • Goodness-of-fit tests and model selection: Provides goodness-of-fit testing and model selection procedures to assess model adequacy and choose among competing dose-response models.
  • Advanced optimization techniques: Implements the Newton method with a trust-region approach using analytical gradients and Hessian matrices for parameter estimation.

Scientific Applications:

  • Pharmacology: Characterizes drug effect curves and estimates potency and efficacy parameters from dose-response experiments.
  • Toxicology: Quantifies toxic responses across dose ranges and supports toxicological assessment via dose-response modeling.
  • Epidemiology: Analyzes exposure–response relationships in population-level dose-response studies.
  • Drug sensitivity screening: Fits and evaluates dose-response models for large-scale drug sensitivity screening datasets.

Methodology:

Computational methods explicitly include least squares dose-response fitting with strategic starting points, Newton optimization with a trust-region framework using analytical gradients and Hessians, plus goodness-of-fit testing and model selection.

Topics

Details

License:
MIT
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
11/3/2021
Last Updated:
11/3/2021

Operations

Publications

Malyutina A, Tang J, Pessia A. drda: An R package for dose-response data analysis. Unknown Journal. 2021. doi:10.1101/2021.06.07.447323.