DrEdGE

DrEdGE enables interactive visualization and exploration of RNA sequencing (RNAseq) data to facilitate discovery of differentially expressed genes, samples, and expression patterns.

Key Features:

• Interactive Data Visualization: Generates dynamic, customizable visual representations of RNA sequencing (RNAseq) data.
• Queryable Visualizations: Allows condition-based querying of visualizations to identify genes, samples, or expression patterns of interest.
• Public Dataset Integration: Supports creation of visualizations from public RNAseq datasets including human neuronal tissue, mouse embryonic tissue, and Caenorhabditis elegans whole embryos.
• Differential Expression Exploration: Facilitates examination and comparison of differential gene expression patterns across samples and conditions.

Scientific Applications:

• Differential gene expression analysis: Enables identification and visualization of differentially expressed genes from RNAseq datasets.
• Developmental biology: Supports exploration of temporal and tissue-specific expression patterns in embryonic datasets.
• Neurobiology: Facilitates visualization and comparison of gene expression in human neuronal tissue datasets.
• Evolutionary genetics: Allows comparative examination of expression patterns across species and developmental stages.

Methodology:

Generation of interactive, queryable visualizations from RNA sequencing (RNAseq) datasets.