drfindid
drfindid identifies and retrieves records from public molecular biology databases using unique database identifiers within the EMBOSS suite to support molecular biology data retrieval.
Key Features:
- Integration with EMBOSS C libraries: Integrates with EMBOSS's C programming libraries for sequence and database operations.
- Command-line interface: Operates via the EMBOSS command-line interface to interoperate with other EMBOSS applications.
- Database configuration and management: Uses EMBOSS database configuration mechanisms to locate and retrieve public database entries by identifier.
- Customization and extensibility: Supports ACD file–based customization and wrapping/porting of third-party applications into the EMBOSS framework.
Scientific Applications:
- Database identification: Locate public databases and retrieve entries by specific identifiers for molecular biology analyses.
- Tool development: Enable development and integration of new applications within the EMBOSS framework via ACD and C library support.
- Workflow integration: Incorporate database retrieval steps into EMBOSS-based command-line workflows for complex analyses.
Methodology:
Operates within the EMBOSS framework using its command-line interface and C programming libraries to locate and retrieve database entries by identifier, and supports ACD-based customization and wrapping/porting of applications.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Publications
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.