drfindid

drfindid identifies and retrieves records from public molecular biology databases using unique database identifiers within the EMBOSS suite to support molecular biology data retrieval.


Key Features:

  • Integration with EMBOSS C libraries: Integrates with EMBOSS's C programming libraries for sequence and database operations.
  • Command-line interface: Operates via the EMBOSS command-line interface to interoperate with other EMBOSS applications.
  • Database configuration and management: Uses EMBOSS database configuration mechanisms to locate and retrieve public database entries by identifier.
  • Customization and extensibility: Supports ACD file–based customization and wrapping/porting of third-party applications into the EMBOSS framework.

Scientific Applications:

  • Database identification: Locate public databases and retrieve entries by specific identifiers for molecular biology analyses.
  • Tool development: Enable development and integration of new applications within the EMBOSS framework via ACD and C library support.
  • Workflow integration: Incorporate database retrieval steps into EMBOSS-based command-line workflows for complex analyses.

Methodology:

Operates within the EMBOSS framework using its command-line interface and C programming libraries to locate and retrieve database entries by identifier, and supports ACD-based customization and wrapping/porting of applications.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Publications

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Documentation

Downloads

Links