drfindresource

drfindresource locates and facilitates utilization of public molecular biology databases within the EMBOSS framework to support database-driven analyses.


Key Features:

  • Integration with EMBOSS: Integrates with the European Molecular Biology Open Software Suite (EMBOSS) to operate within EMBOSS libraries and conventions.
  • Discovery of public databases: Identifies relevant public molecular biology databases for downstream analyses.
  • Database configuration and management: Supports configuration and management of databases under EMBOSS for use in analyses.
  • EMBOSS C libraries: Leverages EMBOSS C programming libraries to enable development and extension of bioinformatics applications.
  • Customization and extensibility: Supports ACD file development and enables API programming, wrapping, and porting of applications within EMBOSS.

Scientific Applications:

  • Molecular biology research: Enables selection of public databases to support analyses such as genomic analysis and protein structure prediction.
  • Tool development: Facilitates creation and extension of bioinformatics applications using EMBOSS C libraries and ACD files.

Methodology:

Integration with EMBOSS; use of EMBOSS C programming libraries; ACD file development; API programming, wrapping, and porting of applications; database configuration under EMBOSS.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Documentation

Downloads

Links