drtext
drtext extracts complete textual data entries from biological databases within the EMBOSS suite to support downstream bioinformatics analyses.
Key Features:
- Integration with EMBOSS: Operates within the EMBOSS suite and leverages EMBOSS's software framework and ecosystem of over 200 applications.
- Text extraction: Extracts and manages complete textual data entries from biological databases for downstream analysis.
- Customization and extensibility: Uses EMBOSS's extensible C programming libraries and supports ACD file development for creating or modifying application interfaces.
- API programming support: Implements EMBOSS API programming guidelines to enable application development and integration with third-party software.
Scientific Applications:
- Data Retrieval: Enables extraction of complete text entries from biological databases to support comprehensive data analysis and interpretation.
- Tool Development: Provides a foundation for developing or extending bioinformatics applications using EMBOSS C libraries and ACD files.
Methodology:
Implements text extraction using EMBOSS's C programming libraries, ACD file definitions, and EMBOSS API programming guidelines within the EMBOSS framework.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Publications
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Documentation
Terms of use
http://emboss.open-bio.org/html/dev/ch01s01.htmlCitation instructions
http://emboss.open-bio.org/html/use/pr02s04.html