drtext

drtext extracts complete textual data entries from biological databases within the EMBOSS suite to support downstream bioinformatics analyses.


Key Features:

  • Integration with EMBOSS: Operates within the EMBOSS suite and leverages EMBOSS's software framework and ecosystem of over 200 applications.
  • Text extraction: Extracts and manages complete textual data entries from biological databases for downstream analysis.
  • Customization and extensibility: Uses EMBOSS's extensible C programming libraries and supports ACD file development for creating or modifying application interfaces.
  • API programming support: Implements EMBOSS API programming guidelines to enable application development and integration with third-party software.

Scientific Applications:

  • Data Retrieval: Enables extraction of complete text entries from biological databases to support comprehensive data analysis and interpretation.
  • Tool Development: Provides a foundation for developing or extending bioinformatics applications using EMBOSS C libraries and ACD files.

Methodology:

Implements text extraction using EMBOSS's C programming libraries, ACD file definitions, and EMBOSS API programming guidelines within the EMBOSS framework.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Publications

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Documentation

Downloads

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