drug2ways
drug2ways predicts potential drug candidates and mechanisms by reasoning over causal paths in multimodal causal large-scale biological networks to support drug discovery and drug repositioning.
Key Features:
- Causal Path Reasoning: Implements an efficient algorithm that reasons over causal paths in extensive biological networks to identify how a drug candidate might influence specific biological states associated with disease.
- Multimodal Causal Networks: Operates on multimodal causal networks to integrate diverse types of molecular interactions within large-scale biological networks.
- Network Topology Utilization: Leverages network topology to elucidate potential therapeutic targets and guide drug repositioning by revealing pathway-level relationships.
- Standard Network Format Support: Supports multiple standard network formats for input interoperability.
- Clinical Validation: Methodology has been validated using clinical trial data.
Scientific Applications:
- Single-target Drug Candidates: Identifies drugs that target a single biological entity for targeted therapeutic intervention.
- Polypharmacological Properties: Detects candidates with the ability to modulate multiple targets simultaneously for polypharmacological strategies.
- Combination Therapy Candidates: Facilitates identification of drug combinations that could be used in combination therapies to enhance treatment efficacy.
- Drug Repositioning: Guides drug repositioning efforts by mapping existing drugs onto disease-relevant causal pathways.
- Disease Characterization: Supports characterization of disease mechanisms by revealing causal molecular pathways underlying disease states.
Methodology:
Reasoning over causal paths in multimodal causal networks using an efficient algorithm that analyzes network topology in large-scale biological networks.
Topics
Details
- License:
- Apache-2.0
- Tool Type:
- library
- Programming Languages:
- Python
- Added:
- 1/18/2021
- Last Updated:
- 3/3/2021
Operations
Publications
Rivas-Barragan D, Mubeen S, Bernat FG, Hofmann-Apitius M, Domingo-Fernández D. Drug2ways: Reasoning over causal paths in biological networks for drug discovery. Unknown Journal. 2020. doi:10.1101/2020.06.07.138388.
Documentation
User manual
https://drug2ways.readthedocs.ioLinks
Issue tracker
https://github.com/drug2ways/drug2ways/issuesRepository
https://pypi.org/project/drug2ways