drug2ways

drug2ways predicts potential drug candidates and mechanisms by reasoning over causal paths in multimodal causal large-scale biological networks to support drug discovery and drug repositioning.


Key Features:

  • Causal Path Reasoning: Implements an efficient algorithm that reasons over causal paths in extensive biological networks to identify how a drug candidate might influence specific biological states associated with disease.
  • Multimodal Causal Networks: Operates on multimodal causal networks to integrate diverse types of molecular interactions within large-scale biological networks.
  • Network Topology Utilization: Leverages network topology to elucidate potential therapeutic targets and guide drug repositioning by revealing pathway-level relationships.
  • Standard Network Format Support: Supports multiple standard network formats for input interoperability.
  • Clinical Validation: Methodology has been validated using clinical trial data.

Scientific Applications:

  • Single-target Drug Candidates: Identifies drugs that target a single biological entity for targeted therapeutic intervention.
  • Polypharmacological Properties: Detects candidates with the ability to modulate multiple targets simultaneously for polypharmacological strategies.
  • Combination Therapy Candidates: Facilitates identification of drug combinations that could be used in combination therapies to enhance treatment efficacy.
  • Drug Repositioning: Guides drug repositioning efforts by mapping existing drugs onto disease-relevant causal pathways.
  • Disease Characterization: Supports characterization of disease mechanisms by revealing causal molecular pathways underlying disease states.

Methodology:

Reasoning over causal paths in multimodal causal networks using an efficient algorithm that analyzes network topology in large-scale biological networks.

Topics

Details

License:
Apache-2.0
Tool Type:
library
Programming Languages:
Python
Added:
1/18/2021
Last Updated:
3/3/2021

Operations

Publications

Rivas-Barragan D, Mubeen S, Bernat FG, Hofmann-Apitius M, Domingo-Fernández D. Drug2ways: Reasoning over causal paths in biological networks for drug discovery. Unknown Journal. 2020. doi:10.1101/2020.06.07.138388.

Documentation

Links