dynamicLM

dynamicLM implements dynamic landmark models for survival analysis to produce time-updated risk predictions in the presence of competing risks and time-varying covariates.


Key Features:

  • Landmark Model Implementation: Implements landmark models to generate dynamic, time-updated risk predictions for survival outcomes.
  • Competing Risks Analysis: Handles competing risks by modeling multiple potential event types that can affect the primary outcome.
  • Time-Varying Covariates: Incorporates time-varying covariates into landmark analyses to reflect changing risk factor values over time.
  • Cause-Specific Landmark Models: Supports fitting cause-specific landmark models for separate analysis of distinct event causes under competing risks.
  • Predictive Performance Evaluation: Provides predictive performance metrics including time-dependent area under the ROC curve, Brier Score, and calibration metrics.

Scientific Applications:

  • Oncology: Enables dynamic prognostic modeling and competing-risk analysis for cancer progression and treatment response.
  • Cardiology: Supports time-updated risk prediction and competing-event assessment for cardiovascular outcomes.
  • Epidemiology: Facilitates cohort and population studies requiring longitudinal risk prediction with competing risks.

Methodology:

Integration of landmark models with competing-risks methods and incorporation of time-varying covariates; predictive performance assessed using time-dependent AUC, Brier Score, and calibration metrics.

Topics

Details

License:
GPL-3.0
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
3/18/2024
Last Updated:
11/24/2024

Operations

Data Inputs & Outputs

Publications

Fries AH, Choi E, Wu JT, Lee JH, Ding VY, Huang RJ, Liang S, Wakelee HA, Wilkens LR, Cheng I, Han SS. Software Application Profile:<i>dynamicLM</i>—a tool for performing dynamic risk prediction using a landmark supermodel for survival data under competing risks. International Journal of Epidemiology. 2023;52(6):1984-1989. doi:10.1093/ije/dyad122. PMID:37670428. PMCID:PMC10749764.

PMID: 37670428
Funding: - National Institutes of Health: 1R01CA282793, 4R37CA226081