DynLib

DynLib compiles LC-MS spectral metadata for 5,420 maize metabolites to support structural characterization and metabolic network analysis.


Key Features:

  • Extensive compound characterization: Contains LC-MS spectral metadata for 5,420 compounds and enabled structural characterization of 427 compounds, including phenylpropanoids, flavonoids, benzoxazinoids, and auxin-related compounds, of which 75 were previously documented in maize.
  • Organ-resolved profiling: Profiles metabolites from five distinct maize organs using various reversed-phase LC-MS methods.
  • Candidate substrate-product pair (CSPP) networks: Integrates CSPP networks to reveal metabolic relationships and organ-specific metabolite enrichment.
  • Reaction-level mass-difference analysis: Identifies frequent mass differences corresponding to glycosyl- and acyltransferase reactions leading to diverse mixed glycosides with substructures from multiple biochemical classes.
  • Organ-specific molecular patterns: Reveals examples such as maize tassel glycosides that combine phenylpropanoid, flavonoid, and auxin-derived moieties.

Scientific Applications:

  • Metabolic pathway discovery: Supports identification of candidate biochemical transformations and pathway relationships via CSPP networks and mass-difference analysis.
  • Specialized metabolism mapping: Enables organ-specific mapping of phenylpropanoid, flavonoid, benzoxazinoid, and auxin-related metabolite distributions.
  • Systems biology and metabolic engineering: Provides spectral evidence for enzyme-associated modifications (glycosylation, acylation) useful for modeling and engineering plant metabolic networks.
  • Compound identification in plant biochemistry and genetics: Facilitates discovery and structural annotation of novel maize metabolites for biochemical and genetic studies.

Methodology:

Profiling of five maize organs using various reversed-phase LC-MS methods, structural characterization of compounds, integration of candidate substrate-product pair (CSPP) networks, and mass-difference analysis to infer glycosyl- and acyltransferase reactions.

Topics

Details

Tool Type:
web application
Added:
9/8/2021
Last Updated:
9/13/2021

Operations

Data Inputs & Outputs

Essential dynamics

Publications

Desmet S, Saeys Y, Verstaen K, Dauwe R, Kim H, Niculaes C, Fukushima A, Goeminne G, Vanholme R, Ralph J, Boerjan W, Morreel K. Maize specialized metabolome networks reveal organ-preferential mixed glycosides. Computational and Structural Biotechnology Journal. 2021;19:1127-1144. doi:10.1016/j.csbj.2021.01.004. PMID:33680356. PMCID:PMC7890092.