EBD

EBD aggregates and standardizes eye biomarker data from multiomics studies to support research on diagnosis, prognosis, and management of ocular and systemic diseases.


Key Features:

  • Comprehensive Data Compilation: The database includes 889 biomarkers linked to 26 ocular diseases and 939 eye biomarkers associated with 181 systemic conditions, highlighting ocular indicators of neurological, renal, and cardiovascular disorders.
  • Nonbiomarker Catalog: Catalogs 78 nonbiomarkers that were previously investigated but determined not to serve as valid biomarkers.
  • Multiomics Integration: Biomarker entries are derived from comprehensive multiomics profiling.
  • Biological Function and Network Analysis: Incorporates biological function analysis and network topology characteristics for ocular disease biomarkers to identify hub pathways and common network features.
  • Data Standardization: Standardizes collected biomarker data for consistent representation across studies.

Scientific Applications:

  • Biomarker discovery and validation: Aids identification of candidate biomarkers linked to eye disorders and related systemic diseases.
  • Pathway and network analysis: Enables identification of hub pathways and common network features across ocular disease biomarkers.
  • Translational research: Supports investigation of diagnostic, prognostic, and management markers in ophthalmology and systemic conditions.
  • Interdisciplinary studies: Facilitates research on ocular manifestations of neurological, renal, and cardiovascular diseases.

Methodology:

Collection and standardization of eye biomarker data from multiomics studies, followed by biological function analysis and network topology characterization.

Topics

Details

Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Added:
9/22/2023
Last Updated:
9/22/2023

Operations

Data Inputs & Outputs

Publications

Zhang X, Kong L, Liu S, Zhang X, Shang X, Zhu Z, Huang Y, Ma S, Jason H, Kiburg KV, Zheng C, Hu Y, Li C, Wu G, Liang Y, He M, Wang Y, Bai X, Shi D, Wang W, Zhang C, Zhao K, Yuan H, Hu G, Hu Y, Liang H, Yu H, Zhang L, He M. EBD: an eye biomarker database. Bioinformatics. 2023;39(5). doi:10.1093/bioinformatics/btad194. PMID:37052519. PMCID:PMC10168589.

PMID: 37052519
Funding: - National Natural Science Foundation of China: 32200545