ECCDIA

ECCDIA analyzes clinical and survival data from The Surveillance, Epidemiology, and End Results (SEER) database to characterize risk factors, prognostic variables, and survival probabilities in esophageal cancer.


Key Features:

  • SEER data: Uses records from 77,273 esophageal cancer patients derived from the SEER database.
  • Seven analysis modules: Comprises seven distinct analysis and visualization modules for clinical data exploration.
  • Distribution analysis: Computes distribution analysis of clinical factor ratios to assess prevalence and relationships among clinical variables.
  • Sankey plot analysis: Visualizes interrelationships among clinical factors using Sankey plots to show variable flows between patient subgroups.
  • Geographical distribution map: Maps geographical distribution of clinical factors to identify regional trends and disparities.
  • Survival analysis: Performs Kaplan–Meier (K–M) analysis and Cox proportional hazards modeling to evaluate survival probabilities and prognostic factors.
  • Nomogram prediction: Provides nomogram-based survival probability prediction for esophageal cancer patient subgroups.

Scientific Applications:

  • Risk factor characterization: Identification and quantification of clinical risk factors associated with esophageal cancer onset and progression.
  • Prognostic factor identification: Detection of variables correlated with patient survival using K–M curves and Cox models.
  • Subgroup survival prediction: Estimation of survival probabilities for defined patient subgroups via nomograms.
  • Variable relationship analysis: Exploration of interactions among clinical factors through Sankey visualization.
  • Geographical epidemiology: Assessment of regional variations in clinical factor distributions across the SEER cohort.

Methodology:

Uses SEER records (77,273 patients) and implements distribution analysis of clinical factor ratios, Sankey plots, geographic mapping, Kaplan–Meier (K–M) survival analysis, Cox proportional hazards modeling, and nomogram-based survival prediction.

Topics

Details

Programming Languages:
R
Added:
1/18/2021
Last Updated:
3/5/2021

Operations

Publications

Yang J, Shang J, Song Q, Yang Z, Chen J, Yu Y, Shi L. ECCDIA: an interactive web tool for the comprehensive analysis of clinical and survival data of esophageal cancer patients. BMC Cancer. 2020;20(1). doi:10.1186/s12885-020-07479-9. PMID:33046018. PMCID:PMC7552344.

PMID: 33046018
PMCID: PMC7552344
Funding: - National Key R&D Project of China: 2017YFC0907502, 2017YFF0204600, 2018YFE0201600 - National Natural Science Foundation of China: 31720103909 - Shanghai Municipal Science and Technology Major Project: 2017SHZDZX01 - 111 Project: B13016

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