ECCDIA
ECCDIA analyzes clinical and survival data from The Surveillance, Epidemiology, and End Results (SEER) database to characterize risk factors, prognostic variables, and survival probabilities in esophageal cancer.
Key Features:
- SEER data: Uses records from 77,273 esophageal cancer patients derived from the SEER database.
- Seven analysis modules: Comprises seven distinct analysis and visualization modules for clinical data exploration.
- Distribution analysis: Computes distribution analysis of clinical factor ratios to assess prevalence and relationships among clinical variables.
- Sankey plot analysis: Visualizes interrelationships among clinical factors using Sankey plots to show variable flows between patient subgroups.
- Geographical distribution map: Maps geographical distribution of clinical factors to identify regional trends and disparities.
- Survival analysis: Performs Kaplan–Meier (K–M) analysis and Cox proportional hazards modeling to evaluate survival probabilities and prognostic factors.
- Nomogram prediction: Provides nomogram-based survival probability prediction for esophageal cancer patient subgroups.
Scientific Applications:
- Risk factor characterization: Identification and quantification of clinical risk factors associated with esophageal cancer onset and progression.
- Prognostic factor identification: Detection of variables correlated with patient survival using K–M curves and Cox models.
- Subgroup survival prediction: Estimation of survival probabilities for defined patient subgroups via nomograms.
- Variable relationship analysis: Exploration of interactions among clinical factors through Sankey visualization.
- Geographical epidemiology: Assessment of regional variations in clinical factor distributions across the SEER cohort.
Methodology:
Uses SEER records (77,273 patients) and implements distribution analysis of clinical factor ratios, Sankey plots, geographic mapping, Kaplan–Meier (K–M) survival analysis, Cox proportional hazards modeling, and nomogram-based survival prediction.
Topics
Details
- Programming Languages:
- R
- Added:
- 1/18/2021
- Last Updated:
- 3/5/2021
Operations
Publications
Yang J, Shang J, Song Q, Yang Z, Chen J, Yu Y, Shi L. ECCDIA: an interactive web tool for the comprehensive analysis of clinical and survival data of esophageal cancer patients. BMC Cancer. 2020;20(1). doi:10.1186/s12885-020-07479-9. PMID:33046018. PMCID:PMC7552344.