edamhasoutput
edamhasoutput queries the EDAM ontology to identify terms connected by the "has_output" relation, enabling discovery of data output types and relationships in bioinformatics workflows.
Key Features:
- Integration with EMBOSS: Integrates EDAM "has_output" term discovery with the EMBOSS suite to map ontology outputs to EMBOSS applications and data types.
- Ontology Exploration: Identifies EDAM ontology terms linked by the "has_output" relation to reveal data flow and dependencies in bioinformatics analyses.
Scientific Applications:
- Molecular Biology Research: Identify and classify expected output data types from molecular biology analyses to inform downstream processing and interpretation.
- Bioinformatics Tool Development: Guide development and extension of EMBOSS applications by clarifying input–output relationships via EDAM "has_output" mappings.
Methodology:
Queries the EDAM ontology to extract terms associated with the "has_output" relation for specified bioinformatics processes.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Data retrieval
Publications
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Documentation
Terms of use
http://emboss.open-bio.org/html/dev/ch01s01.htmlCitation instructions
http://emboss.open-bio.org/html/use/pr02s04.html