edamhasoutput

edamhasoutput queries the EDAM ontology to identify terms connected by the "has_output" relation, enabling discovery of data output types and relationships in bioinformatics workflows.


Key Features:

  • Integration with EMBOSS: Integrates EDAM "has_output" term discovery with the EMBOSS suite to map ontology outputs to EMBOSS applications and data types.
  • Ontology Exploration: Identifies EDAM ontology terms linked by the "has_output" relation to reveal data flow and dependencies in bioinformatics analyses.

Scientific Applications:

  • Molecular Biology Research: Identify and classify expected output data types from molecular biology analyses to inform downstream processing and interpretation.
  • Bioinformatics Tool Development: Guide development and extension of EMBOSS applications by clarifying input–output relationships via EDAM "has_output" mappings.

Methodology:

Queries the EDAM ontology to extract terms associated with the "has_output" relation for specified bioinformatics processes.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Publications

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Documentation

Downloads

Links